Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0869
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    30   1.3  
12_01_0117 + 893924-893971,894944-895003,895024-895174,895410-89...    30   1.7  
12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547     28   7.0  
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535...    28   7.0  
04_01_0113 + 1188285-1188420,1189245-1189795                           27   9.3  
01_01_1121 + 8893177-8893199,8893260-8893287,8893656-8893730,889...    27   9.3  

>11_01_0110 +
           850780-850805,851465-851537,851558-851720,851947-852260,
           852330-852409,852506-852848,853068-853166,853240-853360,
           853567-853723,853976-854099,855275-855368,855866-857259,
           857882-857924,858240-858458,859379-859605,859701-859948,
           860246-860552,860725-861153
          Length = 1486

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -3

Query: 462 VFARKGR*VHGLSLKEFANTSPKKSSASKILPSARNRDPLRRSGEKHSGLCLWV 301
           VF RKG   +G+  +E+ N   KK S    LP+    +PL R   K   LCLW+
Sbjct: 252 VFRRKGVKEYGVGEQEWQN---KKDSNGSNLPT----NPLNRIWGKFLELCLWI 298


>12_01_0117 +
           893924-893971,894944-895003,895024-895174,895410-895884,
           895974-896316,896347-896391,896533-896631,896708-896828,
           897032-897255
          Length = 521

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -3

Query: 462 VFARKGR*VHGLSLKEFANTSPKKSSASKILPSARNRDPLRRSGEKHSGLCLWV 301
           VF RKG   +G+  +E+ N   KK S    LP+    +PL R   K   LCLW+
Sbjct: 278 VFRRKGVKENGVGEQEWQN---KKDSNDSNLPT----NPLNRIWGKFLELCLWI 324


>12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547
          Length = 359

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 254 LKHRSPFSSITTKTSTTHRHSPLCFSPDLLSGSRFRAD--GRIFEALLFLGLVLANSFRL 427
           L++RSP S    KT+   RH  L +S  L  G+    +  G++       G+V AN  R+
Sbjct: 208 LRNRSPTSKKAAKTTVWSRHCSLAWSEGLTIGNDPGRNKLGQVGLVTKITGMVFANLTRV 267


>08_01_0609 +
           5345761-5345862,5346808-5346871,5346958-5350191,
           5350375-5350589,5351123-5351393,5351986-5352161,
           5352287-5352394,5352821-5352930,5354291-5354393,
           5354658-5354828,5354952-5355080,5355322-5355504,
           5355612-5355701,5355823-5355934,5356100-5356227,
           5357769-5357825,5357872-5357923,5358318-5358393,
           5358860-5358950,5359046-5359224,5359563-5359681,
           5359783-5359880
          Length = 1955

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 200 GKQLA*GELYSSDVNQNTLKHRSPF-SSITTKTSTTHRHSPLCFSPDLLS 346
           GKQ++   +    V + T  HR P  SS   +  T H  +P+   P+L+S
Sbjct: 555 GKQISIDSMNDDVVEEGTKHHRYPMLSSAFIEVKTIHE-TPVSLKPELMS 603


>04_01_0113 + 1188285-1188420,1189245-1189795
          Length = 228

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 602 GNALWMTAVAPGSMDELYSGGGRCDGKIEMPVSSRTIPVFRYFDLPLSSRGRV 444
           G ALW  A AP  M   ++ GG  + +I      R    +    +P+ + GRV
Sbjct: 10  GVALWGRATAPQPMGWWWAAGGAREIEIGRRRGDRNALTYDNNGMPIQANGRV 62


>01_01_1121 +
           8893177-8893199,8893260-8893287,8893656-8893730,
           8894748-8894813,8894917-8894959,8895102-8895150,
           8895899-8895992,8896078-8896130,8896921-8897005,
           8897242-8897344,8897421-8897513,8897985-8898051,
           8898309-8898375,8898463-8898516,8898632-8898766
          Length = 344

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 130 AGVEKLSGM--LTVFRQSPGSPTHERGEQRGDQHAARA 23
           +G+  L GM  L+ F  + G P++ R +  G  HA++A
Sbjct: 283 SGLYALPGMTILSAFLDAVGGPSYMRADDHGGNHASQA 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,850,545
Number of Sequences: 37544
Number of extensions: 343758
Number of successful extensions: 959
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)