Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0869
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)                    28   5.4  
SB_50322| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-33)                 27   9.5  

>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
          Length = 844

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 79  GSPTHERGEQRGDQHAARAQRRTQ 8
           G+PTH+  E++GDQ+A     +T+
Sbjct: 703 GAPTHDDQEEQGDQNAKEQSDKTE 726


>SB_50322| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-33)
          Length = 418

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 182 CFQVPSLNKAIFFGYFFCRC 123
           CFQ P+L  A+ F Y  C C
Sbjct: 176 CFQKPNLKPALLFIYVSCSC 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,089,376
Number of Sequences: 59808
Number of extensions: 383593
Number of successful extensions: 1109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)