Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0869
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   7.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.9  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 188 YSCFQVPSLNKAIFFGYFFCRC 123
           +SC   P+ +K+  +G+  CRC
Sbjct: 277 HSCEACPAHSKSSDYGFTECRC 298


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 84   DCLNTVSIPLNFSTPAKKIAEENGLV*TGNLETAVSSAMVSNWLKESCTPPTSIKIPSST 263
            D +N V   +  +TPAKK     G      ++++  S + SN   +   P   I++ +S 
Sbjct: 874  DVINDVKTQITTNTPAKKATNIGGKP-VAVVKSSAQSLLQSN---QQHFPHHQIQVSTSA 929

Query: 264  G 266
            G
Sbjct: 930  G 930


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 169 GTWKQLYHQQW 201
           GT+K LY Q W
Sbjct: 283 GTYKTLYKQMW 293


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/11 (45%), Positives = 11/11 (100%)
 Frame = +1

Query: 271 VLVDYDEDFDD 303
           ++VDY+++FD+
Sbjct: 258 IMVDYEDEFDE 268


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 288 VVIDENGDRCLRVF*LTSEEYSS 220
           ++ID   D+ LR++ L S + +S
Sbjct: 146 IIIDLKTDKILRIYPLKSSDQTS 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,235
Number of Sequences: 438
Number of extensions: 3426
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)