Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0869
(629 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48390.1 68416.m05282 MA3 domain-containing protein similar t... 31 0.63
At3g18050.1 68416.m02296 expressed protein 30 1.1
At2g43490.1 68415.m05404 RabGAP/TBC domain-containing protein si... 30 1.5
At1g29395.1 68414.m03595 stress-responsive protein, putative sim... 29 1.9
At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putativ... 28 4.4
At1g21480.2 68414.m02686 exostosin family protein contains Pfam ... 28 5.9
At1g21480.1 68414.m02685 exostosin family protein contains Pfam ... 28 5.9
At4g30190.1 68417.m04292 ATPase 2, plasma membrane-type, putativ... 27 7.8
>At3g48390.1 68416.m05282 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 633
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -3
Query: 429 LSLKEFANTSPKKSSASKILPSARNRDPLRRSGEK 325
L+L+E +N+ P KS+ S+ + SAR+ R +GE+
Sbjct: 465 LNLEEISNSLPPKSTGSETIRSARSLISARHAGER 499
>At3g18050.1 68416.m02296 expressed protein
Length = 335
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 335 DLLSGSRFRADGRIFEALLFLGLVLANSFRLNP*THLPFRAKTKEDQN 478
D LSGS ADG F LL L + ++LNP R +KED+N
Sbjct: 195 DCLSGSHNNADG--FSPLLGCNKCLNSLYKLNPKKTSGTRNPSKEDRN 240
>At2g43490.1 68415.m05404 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 756
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 242 NQNTLKHRSPFSSITTKTSTTHRHSPLCFSPDLLSG 349
N NT H S +S+ T TS HR S DL+SG
Sbjct: 174 NANTENHHSDWSNNGTDTSHLHRRGSSSESVDLVSG 209
>At1g29395.1 68414.m03595 stress-responsive protein, putative
similar to cold acclimation WCOR413-like protein gamma
form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar
to stress-regulated protein SAP1 [Xerophyta viscosa]
gi|21360378|gb|AAM47505
Length = 225
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +2
Query: 251 TLKHRSPFSSITTKT-----STTHRH-SPLCFSPDLLSGSRFR 361
+L H+ PF S+ ++ S RH SP+CF+P LSG R R
Sbjct: 13 SLHHQKPFLSLKLRSRPSDLSGLGRHTSPVCFNPLRLSGDRQR 55
>At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putative /
proton pump 1, putative / proton-exporting ATPase,
putative strong similarity to SP|P20649 ATPase 1, plasma
membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis
thaliana}; contains InterPro accession IPR001757: ATPase,
E1-E2 type; contains Pfam profile PF00690: Cation
transporter/ATPase, N-terminus
Length = 949
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -3
Query: 459 FARKGR*VHGLSLKEFANTSPKKSS---ASKILPSARNRDPLRRSGEKHS 319
+A+ R +HGL KE N P+K S S+I A+ R + R E H+
Sbjct: 875 WAQAQRTLHGLQPKEDVNIFPEKGSYRELSEIAEQAKRRAEIARLRELHT 924
>At1g21480.2 68414.m02686 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 410
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 620 DKKKTSGNALWMTAVAPGSMDELYSGGGRCDGKIEMPVSSR 498
DKK T+ W + PG++D+ + G+ D + +P+S R
Sbjct: 225 DKKDTTAFNSWKDIIIPGNVDDAMTKNGQPDVQ-PLPLSKR 264
>At1g21480.1 68414.m02685 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 462
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 620 DKKKTSGNALWMTAVAPGSMDELYSGGGRCDGKIEMPVSSR 498
DKK T+ W + PG++D+ + G+ D + +P+S R
Sbjct: 225 DKKDTTAFNSWKDIIIPGNVDDAMTKNGQPDVQ-PLPLSKR 264
>At4g30190.1 68417.m04292 ATPase 2, plasma membrane-type, putative /
proton pump 2, putative / proton-exporting ATPase,
putative strong similarity to SP|P19456 ATPase 2, plasma
membrane-type (EC 3.6.3.6) (Proton pump 2) {Arabidopsis
thaliana}; contains InterPro accession IPR001757: ATPase,
E1-E2 type; contains Pfam profile PF00690: Cation
transporter/ATPase, N-terminus
Length = 948
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -3
Query: 444 R*VHGLSLKEFANTSPKKSS---ASKILPSARNRDPLRRSGEKHS 319
R +HGL KE N P+K S S+I A+ R + R E H+
Sbjct: 880 RTLHGLQPKEAVNIFPEKGSYRELSEIAEQAKRRAEIARLRELHT 924
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,352,295
Number of Sequences: 28952
Number of extensions: 270192
Number of successful extensions: 721
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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