Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0868
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    27   2.5  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    26   3.3  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    26   3.3  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 266 WKITGLQNVYFAIILFGYYFI 204
           +++TG+    F +ILFG++FI
Sbjct: 737 FRMTGIVGSIFVVILFGFWFI 757


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 266 WKITGLQNVYFAIILFGYYFI 204
           W + GL N+Y  +I++ YYF+
Sbjct: 188 WGVIGL-NLYVHVIMYSYYFL 207


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 350 FKHSHMKDQVCRYHKIIYD 406
           F H H  D VCR H+++ D
Sbjct: 234 FLHKHDMDLVCRAHQVVED 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,367
Number of Sequences: 5004
Number of extensions: 40675
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)