Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0866
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0019 - 9688395-9688867,9688905-9689070                           31   0.43 
03_01_0424 - 3253179-3253367,3253480-3253556,3253654-3253739,325...    28   2.3  
06_03_0311 + 19466258-19466303,19466496-19467087,19468059-194685...    27   5.3  
11_03_0027 + 9078792-9079613                                           27   7.0  
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281...    27   7.0  
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194...    26   9.2  
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710     26   9.2  
02_05_0981 - 33278735-33278746,33278882-33279022,33279145-332791...    26   9.2  

>10_06_0019 - 9688395-9688867,9688905-9689070
          Length = 212

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 203 VRTYNRSYHQELRKL*FCGFVFLLHNVIPSPWKS 102
           VR+Y  S+H    K  +C F F+ H+V+ S W S
Sbjct: 107 VRSYATSFHGT-GKAEYCCFTFIRHDVLASQWSS 139


>03_01_0424 -
           3253179-3253367,3253480-3253556,3253654-3253739,
           3253844-3254321,3254393-3254519,3254624-3254740,
           3254853-3254966,3256650-3256715,3257738-3258117,
           3258217-3258496
          Length = 637

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 268 HPSNRNPLLLHGRNRQGGGTYPCGLTTGPTTRNYANYN 155
           H      ++  G     G    C LTTGP +R+  NYN
Sbjct: 335 HIDGNKEMIAFGTMNIVGSLTSCYLTTGPFSRSAVNYN 372


>06_03_0311 +
           19466258-19466303,19466496-19467087,19468059-19468524,
           19470028-19470081,19470112-19470226,19470499-19470605
          Length = 459

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -1

Query: 274 LPHPSNRNPLLLHGRNRQGGGTYPCGLTTGPTTRNYANYNFAGLFFYYTMLFL 116
           L  P  R  +   G  +Q        L   P T+  A  NFAGL F  ++  L
Sbjct: 334 LYQPDGRTMVYNVGLMQQSTSAASLSLAASPATKTDAKKNFAGLCFLSSLAIL 386


>11_03_0027 + 9078792-9079613
          Length = 273

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -3

Query: 305 SSKASSIVTTAAPP---FKPKPITASRQK*AGWWYLPVRTYNRSYHQ 174
           SS +SS+ TTA+ P     P P+TAS         L  +   R Y Q
Sbjct: 52  SSSSSSVTTTASTPNSPVTPAPVTASSPPPPSLELLGAQLAERDYRQ 98


>10_01_0266 +
           2816391-2818898,2818934-2819162,2819369-2819444,
           2819776-2819830,2822042-2822110,2823077-2823321,
           2824029-2824065
          Length = 1072

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 353 RAHSGAHRH--LQRKCDISSKASSIVTTAAPPFKP 255
           RAH  +HRH  L     +SS A+S  T++   + P
Sbjct: 9   RAHRSSHRHFLLSSSFHLSSAATSTTTSSTSSYDP 43


>12_01_0268 -
           1941515-1941534,1941868-1942057,1942155-1942322,
           1943425-1943568,1944284-1944443,1944512-1944621,
           1944900-1945019,1945649-1945766,1946610-1946729,
           1947228-1947285,1947590-1947723,1949332-1949414,
           1949544-1949786,1949851-1949976,1950075-1951562
          Length = 1093

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/29 (41%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = -2

Query: 168 TQIIILRVCFF-ITQCYSFTVEVNREHLL 85
           +Q+ +LR+CFF I + Y+F  ++++ HLL
Sbjct: 361 SQVEVLRICFFKIPEVYAF--DLSKLHLL 387


>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
          Length = 640

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -3

Query: 356 GRAHSGAHRHLQRKCDISSKASSIVTTAAPPFKPKPITASRQK*AGWW 213
           G A S A R  +  CD  S     +  AA P   KP TA  ++   WW
Sbjct: 511 GEADS-AWRRARSPCDGGSFGWRSIGGAARPATAKPGTAQWRQCVAWW 557


>02_05_0981 -
           33278735-33278746,33278882-33279022,33279145-33279199,
           33279787-33279950,33280043-33280139,33280507-33280678,
           33281107-33281182,33281545-33281661,33281928-33282007,
           33282225-33282398,33282636-33282765,33282855-33282941,
           33283039-33283302,33284131-33284256
          Length = 564

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 220 PAYFCREAVMGFG---LKGGAAVVTILEALELISHLRCRCL 333
           P  F +EA   FG    K  A + +  E LEL SHLR  C+
Sbjct: 435 PTEFSKEASQHFGDILSKFVARLASAKELLELPSHLRKACI 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,183,727
Number of Sequences: 37544
Number of extensions: 238812
Number of successful extensions: 624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)