Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0866
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   0.94 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   2.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   8.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 0.94
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 145 LFFYYTMLFLHR-GSQS*TFVEYIFH*KNWYPSGIRTPVHRLNTY 14
           ++F+ T+L +     +S T+V  IF  ++W  S +R P +    Y
Sbjct: 32  VYFHVTVLSIDSINEESMTYVADIFLAQSWRDSRLRLPENMSEDY 76


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 280 QRLPHPSNRNPLL-LHGRNRQGGGTYPC 200
           ++LP    ++ LL L+G NR+  G Y C
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQC 399


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 280 QRLPHPSNRNPLL-LHGRNRQGGGTYPC 200
           ++LP    ++ LL L+G NR+  G Y C
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQC 399


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 186 VLPPGITQIIILRVCFFITQCYSFTVEVNREHL 88
           VLP  I  ++ + +   + +    T  VNR HL
Sbjct: 231 VLPMTIIIVLYILIAIKLRRSRMLTATVNRNHL 263


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 61  WYPSGIRTPVHRLNTYAPDV 2
           WY +    P  RLN +  DV
Sbjct: 207 WYLTKHNVPEQRLNYFTEDV 226


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 61  WYPSGIRTPVHRLNTYAPDV 2
           WY +    P  RLN +  DV
Sbjct: 207 WYLTKHNVPEQRLNYFTEDV 226


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 266 PFKPKPITASRQK*AG 219
           P K +PIT S ++ AG
Sbjct: 330 PLKKEPITQSNKRTAG 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,969
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)