Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0865
(362 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 32 0.031
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 29 0.17
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 26 2.1
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 25 2.7
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 25 2.7
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 25 2.7
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 3.6
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 4.8
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 24 6.3
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 6.3
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 24 6.3
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 24 8.3
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 24 8.3
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 24 8.3
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 31.9 bits (69), Expect = 0.031
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 263 CHRCQLYGHSARNCNARPRCVKC 331
C+ C YGH AR+C +C C
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSC 140
Score = 29.5 bits (63), Expect = 0.17
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 254 PG-QCHRCQLYGHSARNCNARPRCVKC-LDDHATTDCS 361
PG +C+ C GH AR C C C H ++C+
Sbjct: 15 PGPRCYNCGENGHQARECTKGSICYNCNQTGHKASECT 52
Score = 24.6 bits (51), Expect = 4.8
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Frame = +2
Query: 263 CHRCQLYGHSARNCNARP------RCVKC-LDDHATTDC 358
C+ C GH R+C + P C KC H DC
Sbjct: 60 CYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 24.6 bits (51), Expect = 4.8
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = +2
Query: 206 CGLLGVTVEAPYKRGTPGQ---CHRCQLYGHSARNC 304
CG G V P Q C++C GH AR+C
Sbjct: 63 CGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 206 CGLLGVTVEAPYKRGTPGQ-CHRCQLYGHSARNCNA 310
CG +G ++ + GQ C++C GH A NC +
Sbjct: 140 CGKIGHR-SFECQQASDGQLCYKCNQPGHIAVNCTS 174
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 29.5 bits (63), Expect = 0.17
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 263 CHRCQLYGHSARNCNARPRCVKC--LDDHATTDC 358
CH C+ GH +++C C C +DDH + C
Sbjct: 89 CHNCKGNGHISKDC-PHVLCTTCGAIDDHISVRC 121
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 2.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 237 GASTVTPNRPHTVRRHEAIFLPSRCGFEC 151
GA + + P VRRH A F+ +R GF+C
Sbjct: 134 GAYSASQGIP-LVRRHVADFIRARDGFDC 161
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 2.7
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = +2
Query: 257 GQCHRCQLYGHSARNCNARPR 319
G C C H ++C RPR
Sbjct: 111 GACENCGAMSHKVKDCMERPR 131
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 2.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 320 NAVARCSYARSAHKAGNGGTARESRVCRGPLR 225
+AVA C + + G+ GT R V PLR
Sbjct: 113 DAVAACGPREDSTRIGSAGTVRRQAVDVSPLR 144
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 2.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 320 NAVARCSYARSAHKAGNGGTARESRVCRGPLR 225
+AVA C + + G+ GT R V PLR
Sbjct: 113 DAVAACGPREDSTRIGSAGTVRRQAVDVSPLR 144
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.0 bits (52), Expect = 3.6
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -3
Query: 246 RL*GASTVTPNRPHTVRRHEAIFLPSRCGFECYEHHVVRE 127
RL V PNR T +R +F S +CY RE
Sbjct: 83 RLINFPRVNPNRLMTSKRPNELFKTSSMSSDCYSPQKSRE 122
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 4.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 107 YTAGATNSRTTWCS*HSNPHREGKKIASCLRTV 205
Y G +N++ +W S HS +++AS R +
Sbjct: 753 YNVGTSNTQLSWPSTHSTLPATSRELASSDRNI 785
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 24.2 bits (50), Expect = 6.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 99 APGTQRARQIRVRHGARSTRTHTGRARKL 185
A T+ R + G TRT GRARKL
Sbjct: 346 AKSTKPKSITRSKRGDEKTRTLQGRARKL 374
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.2 bits (50), Expect = 6.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 290 SARNCNARPRCVKCLDDHATTD 355
+AR CN PR ++ + H +D
Sbjct: 397 AARKCNLDPRALESFEQHMLSD 418
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 24.2 bits (50), Expect = 6.3
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -3
Query: 117 PAVYPVHTYDGVGLTYQVIFNLLDVELFWDPAYY 16
P ++P+ D + + Q+ + L+D P YY
Sbjct: 201 PPIHPMKNMDSLNTSNQIFWKLIDGSKEATPFYY 234
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 138 VVREFVAPAVYP 103
++R FVAP VYP
Sbjct: 431 IIRHFVAPLVYP 442
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 23.8 bits (49), Expect = 8.3
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 173 PPGVGSSATSTMSYANLSRPLCTRCTLMTG 84
PP V S + MSY L PL R L G
Sbjct: 149 PPPVFSQTSLPMSYNFLQNPLVGRVRLPNG 178
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 49 RRRAFLGPRVLRRGVR 2
R R F G R LRRG+R
Sbjct: 232 RSRHFAGARFLRRGIR 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,954
Number of Sequences: 5004
Number of extensions: 31611
Number of successful extensions: 80
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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