Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0865
(362 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 35 0.020
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 35 0.020
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 33 0.061
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 32 0.11
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 31 0.33
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 31 0.33
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 31 0.33
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 31 0.33
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 31 0.33
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 31 0.33
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 31 0.33
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 31 0.33
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 31 0.33
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 31 0.33
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 30 0.57
Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical pr... 29 1.00
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 1.3
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 1.3
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 1.3
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 1.3
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 1.3
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 1.3
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 28 1.7
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 1.7
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 28 1.7
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 28 1.7
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 28 2.3
L10986-7|AAA28014.2| 362|Caenorhabditis elegans Hypothetical pr... 28 2.3
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 28 2.3
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 28 2.3
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 28 2.3
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 28 2.3
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 27 5.3
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 26 7.0
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 26 7.0
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 26 7.0
U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical pr... 26 9.3
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 26 9.3
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 26 9.3
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 26 9.3
AC024746-10|AAF60400.2| 483|Caenorhabditis elegans Hypothetical... 26 9.3
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 34.7 bits (76), Expect = 0.020
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 248 GTPGQCHRCQLYGHSARNCNARPR-CVKCLD-DHATTDCS 361
G C C+ YGH A C+A R C C D +H +C+
Sbjct: 199 GISNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 34.7 bits (76), Expect = 0.020
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 248 GTPGQCHRCQLYGHSARNCNARPR-CVKCLD-DHATTDCS 361
G C C+ YGH A C+A R C C D +H +C+
Sbjct: 199 GISNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 33.1 bits (72), Expect = 0.061
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 245 RGTPGQCHRCQLYGHSARNCNARPRCVKCLDDH 343
RG PG C CQ +GH +R C P+ V D+H
Sbjct: 164 RGGPGHCFHCQEHGHISRMC---PKKVGETDEH 193
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 32.3 bits (70), Expect = 0.11
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 257 GQCHRCQLYGHSARNCNAR 313
GQCH C+ GH ARNC +
Sbjct: 574 GQCHYCKNVGHMARNCKKK 592
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 30.7 bits (66), Expect = 0.33
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 242 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDC 358
+RGTP C C HS R C++ RC+ C + T C
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHC 1039
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 30.7 bits (66), Expect = 0.33
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 242 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDC 358
+RGTP C C HS R C++ RC+ C + T C
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHC 1039
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 30.7 bits (66), Expect = 0.33
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 242 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDC 358
+RGTP C C HS R C++ RC+ C + T C
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHC 1039
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 30.7 bits (66), Expect = 0.33
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 242 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDC 358
+RGTP C C HS R C++ RC+ C + T C
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHC 1039
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical protein
ZC101.2b protein.
Length = 1160
Score = 30.7 bits (66), Expect = 0.33
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 242 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDC 358
+RGTP C C HS R C++ RC+ C + T C
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHC 1039
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 30.7 bits (66), Expect = 0.33
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 242 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDC 358
+RGTP C C HS R C++ RC+ C + T C
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHC 1039
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 30.7 bits (66), Expect = 0.33
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 242 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDC 358
+RGTP C C HS R C++ RC+ C + T C
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHC 1039
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 30.7 bits (66), Expect = 0.33
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 242 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDC 358
+RGTP C C HS R C++ RC+ C + T C
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHC 1039
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 30.7 bits (66), Expect = 0.33
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 242 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDC 358
+RGTP C C HS R C++ RC+ C + T C
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHC 1039
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 30.7 bits (66), Expect = 0.33
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 242 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDC 358
+RGTP C C HS R C++ RC+ C + T C
Sbjct: 994 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHC 1038
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 29.9 bits (64), Expect = 0.57
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Frame = +2
Query: 110 TAGATNSRTTWCS*HSNPHREGKKIASCLRTVCGLLGVTVEAPYKRGTPGQCHRCQLYGH 289
T G T S +CS S+ HR + C + K G C C GH
Sbjct: 306 TNGQTLSPCIFCSSTSHVHRHEE---------CPIFNTAEARIQKAREIGLCFGCLRSGH 356
Query: 290 SARNCNARPR-CVKCLDDHATTDC 358
C +RPR C C +H T C
Sbjct: 357 QRSKC-SRPRTCNHCKGNHHTVFC 379
>Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical
protein K07C5.6 protein.
Length = 647
Score = 29.1 bits (62), Expect = 1.00
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 152 HSNPHREGKKIASCLRTVCGLLGVTVEAPYKRGTPGQCHRCQLYGHSARNCNARPR 319
H PH E +K + + G T ++ K G C C GH R+C RPR
Sbjct: 80 HQRPHEEREKKMTQIHEWYQK-GTTGKSATKF-RKGACENCGAMGHQKRDCFDRPR 133
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.7 bits (61), Expect = 1.3
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Frame = -1
Query: 338 RLNT-SRNAVA-------RCSYARSAHKAGNGGTARESRVCRGPLR*PPIGRTRCGDMRQ 183
RLNT SRNA+ RC R + R RVC P P R C D +
Sbjct: 1880 RLNTCSRNAICYDEPRGYRCECKRGFMDRSPDSSQR-GRVCEPPPPPSPPPRHPCQDPER 1938
Query: 182 FSCPPGVGSSATSTMSY 132
C P AT SY
Sbjct: 1939 NDCHPAGTCRATGAQSY 1955
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 1.3
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Frame = -1
Query: 338 RLNT-SRNAVA-------RCSYARSAHKAGNGGTARESRVCRGPLR*PPIGRTRCGDMRQ 183
RLNT SRNA+ RC R + R RVC P P R C D +
Sbjct: 2464 RLNTCSRNAICYDEPRGYRCECKRGFMDRSPDSSQR-GRVCEPPPPPSPPPRHPCQDPER 2522
Query: 182 FSCPPGVGSSATSTMSY 132
C P AT SY
Sbjct: 2523 NDCHPAGTCRATGAQSY 2539
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.7 bits (61), Expect = 1.3
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Frame = -1
Query: 338 RLNT-SRNAVA-------RCSYARSAHKAGNGGTARESRVCRGPLR*PPIGRTRCGDMRQ 183
RLNT SRNA+ RC R + R RVC P P R C D +
Sbjct: 1880 RLNTCSRNAICYDEPRGYRCECKRGFMDRSPDSSQR-GRVCEPPPPPSPPPRHPCQDPER 1938
Query: 182 FSCPPGVGSSATSTMSY 132
C P AT SY
Sbjct: 1939 NDCHPAGTCRATGAQSY 1955
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 1.3
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Frame = -1
Query: 338 RLNT-SRNAVA-------RCSYARSAHKAGNGGTARESRVCRGPLR*PPIGRTRCGDMRQ 183
RLNT SRNA+ RC R + R RVC P P R C D +
Sbjct: 2464 RLNTCSRNAICYDEPRGYRCECKRGFMDRSPDSSQR-GRVCEPPPPPSPPPRHPCQDPER 2522
Query: 182 FSCPPGVGSSATSTMSY 132
C P AT SY
Sbjct: 2523 NDCHPAGTCRATGAQSY 2539
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 236 PYKRGTPGQCHRCQLYGHSARNC 304
P K P C+ CQ GH++R+C
Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 236 PYKRGTPGQCHRCQLYGHSARNC 304
P K P C+ CQ GH++R+C
Sbjct: 389 PKKEREPRVCYNCQQPGHNSRDC 411
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 236 PYKRGTPGQCHRCQLYGHSARNC 304
P K P C+ CQ GH++R+C
Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 236 PYKRGTPGQCHRCQLYGHSARNC 304
P K P C+ CQ GH++R+C
Sbjct: 389 PKKEREPRVCYNCQQPGHNSRDC 411
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.7 bits (61), Expect = 1.3
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Frame = -1
Query: 338 RLNT-SRNAVA-------RCSYARSAHKAGNGGTARESRVCRGPLR*PPIGRTRCGDMRQ 183
RLNT SRNA+ RC R + R RVC P P R C D +
Sbjct: 2464 RLNTCSRNAICYDEPRGYRCECKRGFMDRSPDSSQR-GRVCEPPPPPSPPPRHPCQDPER 2522
Query: 182 FSCPPGVGSSATSTMSY 132
C P AT SY
Sbjct: 2523 NDCHPAGTCRATGAQSY 2539
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 236 PYKRGTPGQCHRCQLYGHSARNC 304
P K P C+ CQ GH++R+C
Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 236 PYKRGTPGQCHRCQLYGHSARNC 304
P K P C+ CQ GH++R+C
Sbjct: 389 PKKEREPRVCYNCQQPGHNSRDC 411
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 236 PYKRGTPGQCHRCQLYGHSARNC 304
P K P C+ CQ GH++R C
Sbjct: 176 PRKEREPRVCYNCQQPGHTSREC 198
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = +2
Query: 140 WCS*HSNPH-REGKKIASCLRTVCGLLGVTVEAPYKRGT-PGQCHRCQLYGHSARNCNAR 313
+C NP+ R G+ SC T G P PG C C+L+ + NC
Sbjct: 300 FCGRMRNPNFRVGEVPHSCGETCGGARKFGCPHPCTELCHPGPCIECKLFTTKSCNCGKT 359
Query: 314 PRCVKCLDD 340
+ V+C D
Sbjct: 360 KKSVRCGSD 368
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 236 PYKRGTPGQCHRCQLYGHSARNC 304
P K P C+ CQ GH++R C
Sbjct: 176 PRKEREPRVCYNCQQPGHTSREC 198
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 236 PYKRGTPGQCHRCQLYGHSARNC 304
P K P C+ CQ GH++R C
Sbjct: 176 PRKEREPRVCYNCQQPGHTSREC 198
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 132 VRHGARSTRTHTGRARKLPHVSAPCAA---YWGSP*RPPTNAGLPGSATVASFMGT 290
V + A ST T ++P+VS+P +A + P PP+N+G A +S T
Sbjct: 542 VTNSATSTVVDTSSQFQIPYVSSPASATSNIFVGPIPPPSNSGSSSQAPDSSQSAT 597
>L10986-7|AAA28014.2| 362|Caenorhabditis elegans Hypothetical
protein F10E9.3 protein.
Length = 362
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 233 PLR*PPIGRTRCGDMRQFSCPPGVGSSATSTMS 135
P + PPI TR +R S PG +S + + S
Sbjct: 135 PSKTPPIATTRFASLRHLSSAPGTSASTSGSPS 167
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 231 RPPTNAGLPGSATVASF---MGTPRVTATRDRVA 323
+PP +A PG A+ A + TP+VTAT R +
Sbjct: 415 QPPISASTPGKASRADLFNRLATPKVTATPTRTS 448
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 231 RPPTNAGLPGSATVASF---MGTPRVTATRDRVA 323
+PP +A PG A+ A + TP+VTAT R +
Sbjct: 415 QPPISASTPGKASRADLFNRLATPKVTATPTRTS 448
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 231 RPPTNAGLPGSATVASF---MGTPRVTATRDRVA 323
+PP +A PG A+ A + TP+VTAT R +
Sbjct: 415 QPPISASTPGKASRADLFNRLATPKVTATPTRTS 448
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 231 RPPTNAGLPGSATVASF---MGTPRVTATRDRVA 323
+PP +A PG A+ A + TP+VTAT R +
Sbjct: 415 QPPISASTPGKASRADLFNRLATPKVTATPTRTS 448
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 26.6 bits (56), Expect = 5.3
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +1
Query: 13 VVVRGVPKKLDVEQIKNDLVGQSYPVISVHRVHSGRDKFAYDMVL--------VALEPTP 168
++VR + + D E I N L + P + R ++G+D+ L + + P P
Sbjct: 19 LLVREIKRVYDAEMIVNGLGSGTPPPSFLGRANAGKDESMDLSSLRNLLKDDPLLMTPPP 78
Query: 169 GGQENCLMSPHRVRPIGGHRRG 234
G Q SP + IGG + G
Sbjct: 79 GLQRRQTFSPMTLSLIGGLKNG 100
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 251 TPGQCHRCQLYGHSARNCNAR 313
T QCH+C GH +C R
Sbjct: 1353 TDRQCHQCHRIGHFVESCPQR 1373
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 26.2 bits (55), Expect = 7.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 263 CHRCQLYGHSARNC 304
C++CQ GH +RNC
Sbjct: 6 CYKCQQPGHISRNC 19
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 26.2 bits (55), Expect = 7.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 263 CHRCQLYGHSARNC 304
C++CQ GH +RNC
Sbjct: 6 CYKCQQPGHISRNC 19
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Frame = +2
Query: 260 QCHRCQLYGHSARNCN-----ARPRCVKCLD-DHATTDC 358
+C+ C GH +R C RC +C + H + DC
Sbjct: 108 KCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDC 146
>U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical
protein T08H10.1 protein.
Length = 333
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 194 LRTVCGLLGVTVEAPYKRGTPGQ 262
LR +C LGVTV A G+PG+
Sbjct: 197 LRALCKKLGVTVTAYAPLGSPGR 219
>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
protein 3, isoforma protein.
Length = 1175
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 192 HEAIFLPSRCGFECYEHHVVREFVAPAVYPVHT 94
++AI L S FEC E H +EFVA + +HT
Sbjct: 642 NDAIRLSSDM-FECSEQHDCQEFVAFLLDQLHT 673
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 192 HEAIFLPSRCGFECYEHHVVREFVAPAVYPVHT 94
++AI L S FEC E H +EFVA + +HT
Sbjct: 645 NDAIRLSSDM-FECSEQHDCQEFVAFLLDQLHT 676
>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
c-terminal hydrolase protein.
Length = 1175
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 192 HEAIFLPSRCGFECYEHHVVREFVAPAVYPVHT 94
++AI L S FEC E H +EFVA + +HT
Sbjct: 642 NDAIRLSSDM-FECSEQHDCQEFVAFLLDQLHT 673
>AC024746-10|AAF60400.2| 483|Caenorhabditis elegans Hypothetical
protein Y110A2AL.2 protein.
Length = 483
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 272 NGGTARESRVCRGPLR*PPIGRTRCGDM 189
+G ++ ++ CRGP + P +GR D+
Sbjct: 351 DGSSSNRTQTCRGPTKAPTMGRCWSDDV 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,199,591
Number of Sequences: 27780
Number of extensions: 213665
Number of successful extensions: 775
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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