Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0865
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.16 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   0.64 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   2.6  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   3.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   4.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   4.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.9  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 245 VCRGPLR*PPIGRTRCGDMRQFSCPPGVGSSA 150
           VCRG L+ PP GRT   D+   +  PG    A
Sbjct: 647 VCRGKLKLPPDGRTEI-DVAIKTLKPGSADKA 677


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 0.64
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 147 RSTRTHTGRARKLPHVSAPCAAYWGSP*RPPTNAGLPGSAT 269
           R  +T      ++P+V+ P + Y GSP   P +  LP S T
Sbjct: 350 RPKKTRLRWMMEIPNVTLPTSTYSGSPTELPKH--LPTSLT 388


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 52  QIKNDLVGQSYPVISVHRVHSGRDKFAYDMVLVALE 159
           Q+    +  +YPV +  R+ S  D   YD  +  LE
Sbjct: 580 QVNKRSIHNNYPVHTFGRLTSKHDNSLYDEYIPFLE 615


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 141 HVVREFVAPAVYPVHTYDGVGLTYQVI 61
           H+  ++V PA+  V+ +  +  TY  I
Sbjct: 144 HIEDDYVGPAMELVYAWSTIDYTYDSI 170


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 221 PPIGRTRCGDMRQFSCPPGVGSSAT 147
           PP+GR    DMRQ +   GV  S T
Sbjct: 419 PPLGRFAVRDMRQ-TVAVGVIKSVT 442


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 31  PKKLDVEQIKNDLVGQSYPVISVHRVHSGRDKFAYDM 141
           PKK D+  +++D  G       V   HSG   F  ++
Sbjct: 432 PKKSDMSNMQSDDGGPLSLKNKVETTHSGTSLFRINL 468


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 221 PPIGRTRCGDMRQ 183
           PP+GR    DMRQ
Sbjct: 419 PPLGRFAVRDMRQ 431


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 55  IKNDLVGQSYPVISVHRVHS 114
           ++N  +   YP+I VH+  S
Sbjct: 340 LQNTWLDPEYPMIRVHKTQS 359


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 221  PPIGRTRCGDMRQFSCPPGVGSSATSTMSYANLS 120
            PP+   R GD++ F+      SS+  + +++++S
Sbjct: 1029 PPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVS 1062


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 221  PPIGRTRCGDMRQFSCPPGVGSSATSTMSYANLS 120
            PP+   R GD++ F+      SS+  + +++++S
Sbjct: 1025 PPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVS 1058


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,250
Number of Sequences: 438
Number of extensions: 2240
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)