Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0865
(362 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 35 0.019
At1g49730.3 68414.m05576 protein kinase family protein contains ... 31 0.30
At1g49730.2 68414.m05577 protein kinase family protein contains ... 31 0.30
At1g49730.1 68414.m05575 protein kinase family protein contains ... 31 0.30
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 29 0.70
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 29 0.70
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 0.70
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 29 0.70
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 0.70
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 29 1.2
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 28 1.6
At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD) id... 28 1.6
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 28 2.1
At4g21310.1 68417.m03078 expressed protein predicted protein, Ar... 27 2.8
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 27 2.8
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 27 2.8
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 27 3.7
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 27 3.7
At3g52070.2 68416.m05714 expressed protein 27 3.7
At3g52070.1 68416.m05713 expressed protein 27 3.7
At3g20720.1 68416.m02622 expressed protein 27 3.7
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 27 3.7
At4g34230.1 68417.m04864 cinnamyl-alcohol dehydrogenase, putativ... 26 6.5
At3g48195.1 68416.m05258 phox (PX) domain-containing protein con... 26 6.5
At2g04025.1 68415.m00370 expressed protein 26 6.5
At5g47430.1 68418.m05844 expressed protein 26 8.6
At4g17410.1 68417.m02607 expressed protein 26 8.6
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4... 26 8.6
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 34.7 bits (76), Expect = 0.019
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 263 CHRCQLYGHSARNCNARPRCVKCLD-DHATTDCS 361
C+ C L GH A C A RC C + H ++CS
Sbjct: 76 CNNCGLPGHIAAECTAESRCWNCREPGHVASNCS 109
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Frame = +2
Query: 155 SNPHREGKKIASCLR-TVCGLLGVTVEAPYKRGTPGQCHRCQLYGHSARNCNARPRCVKC 331
+N R G C +VC G+ + +C C+ GH A NC+ C C
Sbjct: 58 NNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSC 117
Query: 332 -LDDHATTDCS 361
H DCS
Sbjct: 118 GKSGHRARDCS 128
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 263 CHRCQLYGHSARNCNARPRCVKC-LDDHATTDCS 361
C+ C+ GH AR+C+ C C L H +C+
Sbjct: 57 CNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECT 90
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +2
Query: 263 CHRCQLYGHSARNCNARPRCVKC-LDDHATTDC 358
C C+ GH AR+C P C C + H C
Sbjct: 159 CKNCRTSGHIARDCRNDPVCNICSISGHVARHC 191
>At1g49730.3 68414.m05576 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 394
Score = 30.7 bits (66), Expect = 0.30
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 116 GATNSRTTWCS*HSNPHREGKKIASCLRTVCGLLGVTVEAPYK---RGTPGQCHRCQLYG 286
G T+ + C + EG ++ + CGL G + Y R T Q H+ +G
Sbjct: 20 GVTSDLSETCIASISRAMEGYGVSRNATSFCGL-GTKILVKYDCDGRTTVTQMHQSPGFG 78
Query: 287 HSARNC----NARPRCVKCLDDHAT 349
H +RNC + +C KCL+ T
Sbjct: 79 HVSRNCRLPFSPGHQCRKCLNSGIT 103
>At1g49730.2 68414.m05577 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 450
Score = 30.7 bits (66), Expect = 0.30
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 116 GATNSRTTWCS*HSNPHREGKKIASCLRTVCGLLGVTVEAPYK---RGTPGQCHRCQLYG 286
G T+ + C + EG ++ + CGL G + Y R T Q H+ +G
Sbjct: 76 GVTSDLSETCIASISRAMEGYGVSRNATSFCGL-GTKILVKYDCDGRTTVTQMHQSPGFG 134
Query: 287 HSARNC----NARPRCVKCLDDHAT 349
H +RNC + +C KCL+ T
Sbjct: 135 HVSRNCRLPFSPGHQCRKCLNSGIT 159
>At1g49730.1 68414.m05575 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 663
Score = 30.7 bits (66), Expect = 0.30
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 116 GATNSRTTWCS*HSNPHREGKKIASCLRTVCGLLGVTVEAPYK---RGTPGQCHRCQLYG 286
G T+ + C + EG ++ + CGL G + Y R T Q H+ +G
Sbjct: 76 GVTSDLSETCIASISRAMEGYGVSRNATSFCGL-GTKILVKYDCDGRTTVTQMHQSPGFG 134
Query: 287 HSARNC----NARPRCVKCLDDHAT 349
H +RNC + +C KCL+ T
Sbjct: 135 HVSRNCRLPFSPGHQCRKCLNSGIT 159
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 29.5 bits (63), Expect = 0.70
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +2
Query: 245 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 358
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 92 RGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 260 QCHRCQLYGHSARNCNARP 316
+C+RC GH RNC P
Sbjct: 122 KCYRCGERGHIERNCKNSP 140
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 29.5 bits (63), Expect = 0.70
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +2
Query: 245 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 358
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 51 RGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 260 QCHRCQLYGHSARNCNARP 316
+C+RC GH RNC P
Sbjct: 81 KCYRCGERGHIERNCKNSP 99
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 29.5 bits (63), Expect = 0.70
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +2
Query: 245 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 358
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 51 RGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 260 QCHRCQLYGHSARNCNARPR 319
+C+RC GH RNC P+
Sbjct: 81 KCYRCGERGHIERNCKNSPK 100
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 175 QENCLMSPHRVRPIGGHRRGPLQTR 249
+ NC SP ++R G + R P+++R
Sbjct: 92 ERNCKNSPKKLRRSGSYSRSPVRSR 116
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 29.5 bits (63), Expect = 0.70
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +2
Query: 245 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 358
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 62 RGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 260 QCHRCQLYGHSARNCNARPR 319
+C+RC GH RNC P+
Sbjct: 92 KCYRCGERGHIERNCKNSPK 111
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 175 QENCLMSPHRVRPIGGHRRGPLQTR 249
+ NC SP ++R G + R P+++R
Sbjct: 103 ERNCKNSPKKLRRSGSYSRSPVRSR 127
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 29.5 bits (63), Expect = 0.70
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +2
Query: 245 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 358
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 92 RGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 260 QCHRCQLYGHSARNCNARPR 319
+C+RC GH RNC P+
Sbjct: 122 KCYRCGERGHIERNCKNSPK 141
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 175 QENCLMSPHRVRPIGGHRRGPLQTR 249
+ NC SP ++R G + R P+++R
Sbjct: 133 ERNCKNSPKKLRRSGSYSRSPVRSR 157
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 230 EAPYKRGTPGQCHRCQLYGHSARNCNARPR 319
E Y G +C C GH A NC +P+
Sbjct: 253 EVVYTPGQQERCFLCGQMGHFASNCEGKPK 282
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 242 KRGTPGQCHRCQLYGHSARNCNARPRCVKCLDDHATTDC 358
K GTP C++C GH AR+C + A DC
Sbjct: 234 KTGTP--CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
>At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD)
identical to SP|P48523 Cinnamyl-alcohol dehydrogenase
(EC 1.1.1.195) (CAD) [Arabidopsis thaliana]
Length = 365
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 43 DVEQIKNDLVGQSYPVISVHRV 108
D+ QIKNDL +YP++ H V
Sbjct: 51 DIHQIKNDLGMSNYPMVPGHEV 72
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Frame = +2
Query: 206 CGLLG-VTVEAPYKRGTPGQCHRCQLYGHSARNCNAR--------PRCVKC-LDDHATTD 355
CG +G + + KR C++C GH AR+C+ R C KC + H +
Sbjct: 235 CGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARE 294
Query: 356 CS 361
CS
Sbjct: 295 CS 296
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = +2
Query: 248 GTPGQCHRCQLYGHSARNCNARPR----CVKC-LDDHATTDC 358
G G C+ C GH AR+C + + C +C H DC
Sbjct: 227 GGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDC 268
>At4g21310.1 68417.m03078 expressed protein predicted protein,
Arabidopsis thaliana
Length = 168
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 130 AYDMVLVALEPTPGGQENCLMSPHRVRPIGG 222
A+ M++V ++NC +S HRV IGG
Sbjct: 108 AFSMLIVGTMANSRSRKNCGISHHRVLSIGG 138
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 245 RGTPGQCHRCQLYGHSARNC 304
+GT +C +C+ GH AR+C
Sbjct: 111 KGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 245 RGTPGQCHRCQLYGHSARNC 304
+GT +C +C+ GH AR+C
Sbjct: 111 KGTEDECFKCRRPGHWARDC 130
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Frame = +2
Query: 263 CHRCQLYGHSARNC--------NARPRCVKCLDDHATTDCS 361
C CQ GH++ NC N+RP +D +T C+
Sbjct: 767 CIHCQQRGHASTNCPSRVPASRNSRPTATNPRNDESTVSCN 807
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 27.1 bits (57), Expect = 3.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 263 CHRCQLYGHSARNCNAR 313
C+RC+ GH AR+C+ +
Sbjct: 926 CYRCKKVGHLARDCHGK 942
>At3g52070.2 68416.m05714 expressed protein
Length = 113
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 90 HKCAPGTQRARQIRVRHGARSTRTHTGRARKLP 188
H + RQ RHG RS R + R +KLP
Sbjct: 11 HPLCTNHRTKRQASSRHGVRSMRVMSCRKQKLP 43
>At3g52070.1 68416.m05713 expressed protein
Length = 114
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 90 HKCAPGTQRARQIRVRHGARSTRTHTGRARKLP 188
H + RQ RHG RS R + R +KLP
Sbjct: 11 HPLCTNHRTKRQASSRHGVRSMRVMSCRKQKLP 43
>At3g20720.1 68416.m02622 expressed protein
Length = 1083
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 1 RELRVVVRGVPKKLDVEQIKNDLVGQSYPVISV 99
R RV+ + PK +D +N YPV S+
Sbjct: 831 RTFRVIAKSTPKNVDSNGTENQCDAHKYPVDSI 863
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 245 RGTPGQCHRCQLYGHSARNCN 307
RG+ G C C GH A++C+
Sbjct: 90 RGSGGNCFNCGEVGHMAKDCD 110
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 242 KRGTPGQCHRCQLYGHSARNC 304
+ G G+C+ C GH AR+C
Sbjct: 125 RSGGEGECYMCGDVGHFARDC 145
>At4g34230.1 68417.m04864 cinnamyl-alcohol dehydrogenase, putative
similar to cinnamyl alcohol dehydrogenase, Nicotiana
tabacum [SP|P30359], Populus deltoides, PATCHX:G288753
Length = 357
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 7 LRVVVRGVPKKLDVEQIKNDLVGQSYPVISVHRV 108
+R++ G+ D+ Q KNDL +YP++ H V
Sbjct: 39 IRIICCGICHT-DLHQTKNDLGMSNYPMVPGHEV 71
>At3g48195.1 68416.m05258 phox (PX) domain-containing protein
contains Pfam profile PF00787: PX domain
Length = 938
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 10 RVVVRGVPKKLDVEQIKNDLVGQSYPVISVHRVHSGRDKF 129
RV V GV +K + LVG + V RV SG+DK+
Sbjct: 475 RVEVVGVKQKKGDVSLSERLVGVKEYTVYVIRVWSGKDKW 514
>At2g04025.1 68415.m00370 expressed protein
Length = 110
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 99 APGTQRARQIRVRHGARSTRTHTGRARKLPHVSAPCAAYWGSP*RPPTN 245
A G + + +++ G R T ++ ++ + + A A YW + PP N
Sbjct: 61 ASGEKEEAETKMKRGNRETERNSSKSVEEDGLVAYTADYWRAKHHPPKN 109
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +2
Query: 242 KRGTPGQ-CHRCQLYGHSARNC 304
K PG CHRC + GH ++C
Sbjct: 202 KTPPPGYVCHRCNIPGHFIQHC 223
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +2
Query: 254 PGQ-CHRCQLYGHSARNCN 307
PG CHRC + GH ++C+
Sbjct: 117 PGYVCHRCNVSGHFIQHCS 135
>At1g17580.1 68414.m02165 myosin, putative similar to myosin
GI:433663 from (Arabidopsis thaliana)
Length = 1520
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -3
Query: 225 VTPNRPHTVRRHEAIFLPSRCGFECYEHHVVRE 127
+ N+ + V H+A+F S C F H + E
Sbjct: 559 IDKNKDYIVAEHQALFTASNCKFVAGLFHALHE 591
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,582,730
Number of Sequences: 28952
Number of extensions: 185703
Number of successful extensions: 586
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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