Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0862
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18578| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_9279| Best HMM Match : Piwi (HMM E-Value=0)                         29   3.4  
SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9)            28   6.0  

>SB_18578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 279 DPGRRSKRLSTFTSDLNFGFPFLNHR 356
           DP R  +R+   T+DL FG P L HR
Sbjct: 255 DPMRSHERICRTTNDLFFGHPALGHR 280


>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
          Length = 941

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 198 ICFVVGLKDKSVA*SINVIDVRDR*RYDPGRRSKRLSTFTSDLN 329
           +CF+ GL D   A    + D+    R DP  RSK L+   S++N
Sbjct: 304 LCFLTGLSDDMRADFSVMKDLAVHTRLDPKARSKDLNKLISEIN 347


>SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9)
          Length = 379

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 133 GSYYLLTHKTSIEETANIIKK*NT 62
           GSYY++ H +S+EE   IIK+  T
Sbjct: 194 GSYYIVVHPSSLEEKNIIIKQGET 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,288,195
Number of Sequences: 59808
Number of extensions: 319499
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)