BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0862 (673 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_18578| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_9279| Best HMM Match : Piwi (HMM E-Value=0) 29 3.4 SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9) 28 6.0 >SB_18578| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 480 Score = 29.5 bits (63), Expect = 2.6 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 279 DPGRRSKRLSTFTSDLNFGFPFLNHR 356 DP R +R+ T+DL FG P L HR Sbjct: 255 DPMRSHERICRTTNDLFFGHPALGHR 280 >SB_9279| Best HMM Match : Piwi (HMM E-Value=0) Length = 941 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +3 Query: 198 ICFVVGLKDKSVA*SINVIDVRDR*RYDPGRRSKRLSTFTSDLN 329 +CF+ GL D A + D+ R DP RSK L+ S++N Sbjct: 304 LCFLTGLSDDMRADFSVMKDLAVHTRLDPKARSKDLNKLISEIN 347 >SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9) Length = 379 Score = 28.3 bits (60), Expect = 6.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -1 Query: 133 GSYYLLTHKTSIEETANIIKK*NT 62 GSYY++ H +S+EE IIK+ T Sbjct: 194 GSYYIVVHPSSLEEKNIIIKQGET 217 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,288,195 Number of Sequences: 59808 Number of extensions: 319499 Number of successful extensions: 471 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 458 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 470 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1721264831 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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