Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0862
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    30   1.2  
At1g20750.1 68414.m02599 helicase-related similar to BRCA1-bindi...    29   3.7  

>At5g02880.1 68418.m00231 HECT-domain-containing protein /
           ubiquitin-transferase family protein /
           armadillo/beta-catenin-like repeat-containing protein
           similar to SP|Q14669 Thyroid receptor interacting
           protein 12 (TRIP12) {Homo sapiens}; contains Pfam
           profiles PF00632: HECT-domain (ubiquitin-transferase),
           PF00514: Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -1

Query: 235 ATDLSFKPTTKQIQYCIVK-F*R*L--NKKTCSIK*DGSYYLLT 113
           + DLS KP TK+I  C+ + F R L  + +TC I+ D  Y L T
Sbjct: 550 SADLSQKPVTKEIVKCLCQSFERSLSSSSQTCKIEKDSVYVLAT 593


>At1g20750.1 68414.m02599 helicase-related similar to BRCA1-binding
            helicase-like protein BACH1 (GI:13661819) Homo sapiens].;
          Length = 1179

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 216  LKDKSVA*SINVIDVRDR*RYDPGRRSKRLSTFTSDLNFGFPFLNHRIL 362
            LK +    S  +ID+ +     P  R +  ++FT  + FGFP ++ R++
Sbjct: 939  LKRRKFTTSPIIIDLEEENSNAPDNRPEDHTSFTRRIEFGFPEVDQRVM 987


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,934,325
Number of Sequences: 28952
Number of extensions: 216822
Number of successful extensions: 239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)