Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0861
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0681 + 18628107-18629346,18630476-18630486,18630836-186309...    31   0.82 
11_06_0640 + 25744048-25745021,25745128-25745273,25747870-257479...    29   2.5  
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873...    28   7.6  

>04_03_0681 +
           18628107-18629346,18630476-18630486,18630836-18630943,
           18631158-18631250
          Length = 483

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 593 E*SKVVVISPFSDSYHCSHSRFHTCILGSHTQTPTLERVWRDIPNKRFNSLYIHM 429
           E +++  ISPFS      H  +  C L  H     L+ +W   P  R N    H+
Sbjct: 378 ENNRLEEISPFSQENCHLHRIYLQCDLSKHLMNKALDIIWGTSPEDRENDAQYHV 432


>11_06_0640 +
           25744048-25745021,25745128-25745273,25747870-25747945,
           25747996-25748230
          Length = 476

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -3

Query: 264 LFISRSFCSNITDLQVYSGSILMNYSDTI 178
           LF+++SFC+ + D  VY G++L  Y+D +
Sbjct: 110 LFVTKSFCAIVVD--VYFGALLAYYADHV 136


>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
            23187887-23188159,23188275-23188338,23188479-23188744,
            23188951-23189045,23189544-23189718,23190669-23191063,
            23191830-23191953,23192864-23192959,23193049-23193120,
            23194687-23194824,23195369-23195549,23195602-23195963,
            23196944-23197386,23197461-23197763,23197857-23198081,
            23198260-23198350,23198702-23198779,23198939-23199229,
            23199316-23199513,23199681-23200163,23200488-23200562,
            23201163-23201324,23201400-23201729,23201816-23201916,
            23202477-23202581,23202931-23203162,23203913-23204257,
            23204346-23204447,23206010-23206153,23206463-23206551,
            23206979-23207061,23207172-23207287,23207824-23207909,
            23208461-23208560,23209270-23209335
          Length = 2451

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -1

Query: 635  NISVWSGRRVHGRQE*SKVVVISPFSDSYHCSHSRFHTCILGSHTQTPTLERVWRDIPNK 456
            ++S+   R + GRQ   K++   P +     + SRF + +  S+   P      + +P+ 
Sbjct: 1449 SLSIDLRRELQGRQL-VKLLTTDPLNGGGPAAASRFLSTLRDSNDALPVAIGAMKLLPDL 1507

Query: 455  RFNSLYIHMFI 423
            R   L +H F+
Sbjct: 1508 RSKQLLVHFFL 1518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,140,875
Number of Sequences: 37544
Number of extensions: 222455
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)