Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0861
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27911| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_54186| Best HMM Match : Herpes_U44 (HMM E-Value=7.9)                28   7.8  

>SB_27911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 332 ETNSIYNLTIFKA--HGLNSK***TYLFHVRFVVTLPI 225
           ++N IY +  F+    G NS    TYLFH+ F+ T+P+
Sbjct: 89  QSNKIYAVNNFETILQGKNSPRCTTYLFHLAFIYTMPL 126


>SB_54186| Best HMM Match : Herpes_U44 (HMM E-Value=7.9)
          Length = 377

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 331 KLTQFIISQFLKHMDSTQNNNKLIYFTFVL**HYRSSGIFRFYSNELFRYY 179
           +L+Q +I +  K   ST+ +N+LIY   V+   Y      R+ +N L  YY
Sbjct: 10  QLSQRLIQRGHKTQKSTKKSNRLIYQVIVVTHSYGGRKGVRYLTNYLKVYY 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,175,292
Number of Sequences: 59808
Number of extensions: 286471
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)