Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0860
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   1.7  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    24   5.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    24   5.1  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    24   5.1  
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    24   6.7  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 132 NFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLEGDVVKVKNVHMIDGVK 284
           N N    +GI  E+SK+++   KN + SS + K     V+ +    I+G+K
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIK 422


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +3

Query: 87  EVIHEGTCPELKPVNNFNL---TAYQGIWYEISKFSNE-SEKNGKCSSAEYKLEG 239
           E +   T P+LKPV+ +NL   T+  GI + + + +++ SE++   SS     EG
Sbjct: 174 EQLKHPTKPDLKPVSAWNLLPNTSMAGIQHLMLRVADDLSERSHSYSSLVNLQEG 228


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 128 EQLQLDSLPRHLV*NLEIFQR 190
           + L+ +S P HLV N E+F R
Sbjct: 487 KSLKRESYPAHLVPNFELFTR 507


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 141 LTAYQGIWYEISKFSNESEKNGKCSSAEYKLEGDVVKVK 257
           L  + G+W ++ +F  E     KCS    KL G  V  K
Sbjct: 869 LLMHHGLWQKLEEFLGELRTQTKCS---IKLSGREVVAK 904


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 165 YEISKFSNESEKN--GKCSSAEYKLEGDVVKVK 257
           +E+ K   ES+K   G  S A YKL  ++VK++
Sbjct: 202 FEVIKDLLESDKLTVGASSMARYKLANEIVKMR 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,065,742
Number of Sequences: 5004
Number of extensions: 16338
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)