Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0860
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 47 3e-06
02_04_0592 - 24171698-24172285 33 0.053
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 32 0.12
12_01_1010 - 10280424-10282003,10283359-10283668,10283749-102839... 29 1.1
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 28 2.0
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 28 2.0
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 28 2.0
10_07_0039 - 12269928-12270103,12270871-12271015,12271066-122710... 26 6.1
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 26 6.1
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 26 6.1
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 47.2 bits (107), Expect = 3e-06
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 117 LKPVNNFNLTAYQGIWYEISKF-SNESEKNGKCSSAEYKLEGD-VVKVKNVHMIDGVKKS 290
+K V N +L Y G WYEI+ F S ++G + A Y L GD VKV N DG +
Sbjct: 1 MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60
Query: 291 IEGTVKLTD 317
IEGT D
Sbjct: 61 IEGTAYRAD 69
>02_04_0592 - 24171698-24172285
Length = 195
Score = 33.1 bits (72), Expect = 0.053
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 114 ELKPVNNFNLTAYQGIWYEISKFSNESE-KNGKCSSAEYKL--EGDVVKVKN-VHMIDGV 281
E+ V ++ Y G WYEI+ N + ++G+ + A Y L +G V V N G
Sbjct: 13 EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGK 72
Query: 282 KKSIEGTVKLTDDAN 326
+ I+GT D A+
Sbjct: 73 RDYIKGTAYKADPAS 87
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 126 VNNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLEGD 242
V NFN+ + G WY IS N + C E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239
>12_01_1010 -
10280424-10282003,10283359-10283668,10283749-10283939,
10283967-10284279
Length = 797
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 165 YEISKFSNESEKNGKCSSAEYKLEG-DVVKVKNVHMIDGVKKSIE 296
YE+S++ SEK G S A L G KV+N+ +D +K++E
Sbjct: 200 YELSEYKPLSEKIGSVSGAILILVGLSSSKVENLLTVDRAEKTLE 244
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 148 LTKASGMKSRNFPTNLRRTVNALQLNTNWKVTW*R 252
+ K G +SRN+ N+R V+AL +++ W R
Sbjct: 340 MCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 148 LTKASGMKSRNFPTNLRRTVNALQLNTNWKVTW*R 252
+ K G +SRN+ N+R V+AL +++ W R
Sbjct: 340 MCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 186 NESEKNGKCSSAEYKLEGDVVKVKNVHMIDGVKKSIEGTVKLTDD 320
N+ K GK + Y L+ + +H+I G+ + G V TDD
Sbjct: 476 NKICKKGKAALHRYSLQNNEPGGYELHVICGMNNLVSGPVYCTDD 520
>10_07_0039 -
12269928-12270103,12270871-12271015,12271066-12271094,
12271394-12271478
Length = 144
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 177 KFSNESEKNGKCSSAEYKLEGDVVKVKNVHMIDGVKKSIEG 299
K+ N+ K KC E +EGD + + ++DG ++++ G
Sbjct: 51 KWKNQQRKKIKCG--EPHMEGDFLPSVTIIIMDGGRRAVPG 89
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 90 VIHEGTCPELKPVNNFNLTAYQ 155
V H G+ E+K V NF L YQ
Sbjct: 136 VFHNGSDNEIKDVTNFGLPLYQ 157
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 90 VIHEGTCPELKPVNNFNLTAYQ 155
V H G+ E+K V NF L YQ
Sbjct: 136 VFHNGSDNEIKDVTNFGLPLYQ 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,051,352
Number of Sequences: 37544
Number of extensions: 109019
Number of successful extensions: 281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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