Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0860
         (326 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  37   0.003
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)                 28   2.1  
SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)                    28   2.1  
SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)                  27   2.7  
SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)                   26   6.3  
SB_55464| Best HMM Match : DEP (HMM E-Value=4.2e-07)                   26   6.3  
SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8)                 26   8.3  
SB_43463| Best HMM Match : DUF1240 (HMM E-Value=4.8)                   26   8.3  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_11713| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-13)            26   8.3  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = +3

Query: 102 GTCPELKPVNNFNLTAYQGIWYEI-SKFSNES--EKNGKCSSAEYKLEGD----VVKVKN 260
           G C  +  V   N+T+Y G WY++ S F  E   E+N  C +A+Y L  D    VV    
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKDGKIGVVNSNR 292

Query: 261 VHMIDGVKKSIEG 299
               DG  K I G
Sbjct: 293 DKKPDGELKQITG 305


>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
          Length = 442

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 178 NFPTNLRRTVNALQLNTNWKVTW*R*RTCI*STASRSL*KGR 303
           NF T      +AL++   W VTW R   C  +T S  L  GR
Sbjct: 33  NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74


>SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)
          Length = 508

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 168 EISKFSNESEKNGKCSSAEYKLEGDVVKVKNVHMIDGVK 284
           E+ ++  ESE+NGK SS    +  + V +K + + DG K
Sbjct: 38  EVFEWRFESEENGKMSSV-MTIHSNTVPLKEIGLWDGAK 75


>SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1157

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 120 KPVNNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLEG 239
           K V N +L    G WYEI+ ++     NG  ++    + G
Sbjct: 78  KAVENLHLDISSGNWYEITIYTGVWRNNGTTANVAATISG 117


>SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)
          Length = 678

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +3

Query: 111 PELKPVNNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLEGDVV 248
           P LK +++    A + +W+ +      +++NG  + A+  LE  V+
Sbjct: 189 PSLKGLDSKCFLAIEAVWWLMHHVDGVADRNGAVALAQRMLEARVI 234


>SB_55464| Best HMM Match : DEP (HMM E-Value=4.2e-07)
          Length = 84

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +3

Query: 111 PELKPVNNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLEGDVV 248
           P LK +++    A + +W+ +      +++NG  + A+  LE  V+
Sbjct: 8   PSLKGLDSKCFLAIEAVWWLMHHVDGVADRNGAVALAQRMLEARVI 53


>SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8)
          Length = 515

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 270 IDGVKKSIEGTVKLTDDA 323
           +DGVKK++ GT  LT+ A
Sbjct: 39  LDGVKKALTGTKNLTESA 56


>SB_43463| Best HMM Match : DUF1240 (HMM E-Value=4.8)
          Length = 190

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 270 IDGVKKSIEGTVKLTDDA 323
           +DGVKK++ GT  LT+ A
Sbjct: 4   LDGVKKALTGTKNLTESA 21


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 216 KSIYRSSQIRWKISRFHTRCLGK 148
           ++ YRS +  W  + FH RC GK
Sbjct: 425 RTCYRSLEHGWNGTTFHRRCDGK 447


>SB_11713| Best HMM Match : F5_F8_type_C (HMM E-Value=5e-13)
          Length = 516

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 216 KSIYRSSQIRWKISRFHTRCLGK 148
           ++ YRS +  W  + FH RC GK
Sbjct: 295 RACYRSLEHGWNGTTFHRRCDGK 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,997,668
Number of Sequences: 59808
Number of extensions: 126787
Number of successful extensions: 358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)