Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0860
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    29   1.0  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    29   1.0  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    29   1.0  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    29   1.0  
Z68014-13|CAA92028.2|  582|Caenorhabditis elegans Hypothetical p...    28   1.8  
AY887916-1|AAX34428.1|  582|Caenorhabditis elegans anion transpo...    28   1.8  
U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical pr...    26   5.6  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 102  GTCPELKPVNNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLE 236
            G    L P  N NL +   +   +S +   ++ + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVS-WQAPNQNSWKCSAIRYKLE 2464


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 102  GTCPELKPVNNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLE 236
            G    L P  N NL +   +   +S +   ++ + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVS-WQAPNQNSWKCSAIRYKLE 2464


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 102  GTCPELKPVNNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLE 236
            G    L P  N NL +   +   +S +   ++ + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVS-WQAPNQNSWKCSAIRYKLE 2464


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 102  GTCPELKPVNNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLE 236
            G    L P  N NL +   +   +S +   ++ + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVS-WQAPNQNSWKCSAIRYKLE 2464


>Z68014-13|CAA92028.2|  582|Caenorhabditis elegans Hypothetical
           protein W04G3.6d protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 227 VFS*RAFTVLLRFVGKFRDFIPDALVSCQVEVVHR 123
           +FS    T++L F+G++ + +P  L+SC V V  R
Sbjct: 363 IFSALVLTLVLFFIGQYLEGLPMCLLSCIVIVALR 397


>AY887916-1|AAX34428.1|  582|Caenorhabditis elegans anion
           transporter SULP-7d protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 227 VFS*RAFTVLLRFVGKFRDFIPDALVSCQVEVVHR 123
           +FS    T++L F+G++ + +P  L+SC V V  R
Sbjct: 363 IFSALVLTLVLFFIGQYLEGLPMCLLSCIVIVALR 397


>U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical
           protein C18H9.3 protein.
          Length = 918

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 159 IWYEISKFSNESEKNGKCSSAEYKLEGDVVKV 254
           +W++   F++ES +  +  + EYK  GD+ K+
Sbjct: 399 VWFKAGYFTDESLRVQRGENGEYKTIGDLKKL 430


>U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical
           protein ZC449.1 protein.
          Length = 454

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 174 SKFSNESEKNGKCSSAEYKLEGDVVKVK 257
           S+  + S  NG  S  +YK+ G+ V+V+
Sbjct: 415 SESESSSPSNGGWSECDYKINGETVRVR 442


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 186 NESEKNGKCSSAEYKLEGDVVKVK 257
           ++SE NGKCS  E + E  ++++K
Sbjct: 170 HDSESNGKCSEEEDEDESYLIQLK 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,974,327
Number of Sequences: 27780
Number of extensions: 95432
Number of successful extensions: 255
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)