Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0860
         (326 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    40   3e-04
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    30   0.42 
At5g36740.1 68418.m04402 PHD finger family protein                     29   0.97 
At5g36670.1 68418.m04388 PHD finger family protein                     29   0.97 
At1g03380.1 68414.m00317 expressed protein                             28   1.3  
At5g37100.1 68418.m04453 replication protein-related weak simila...    27   3.0  
At4g23610.1 68417.m03401 expressed protein                             27   3.9  
At2g14800.1 68415.m01677 hypothetical protein                          27   3.9  
At2g05084.1 68415.m00532 hypothetical protein                          27   3.9  
At4g24670.2 68417.m03532 alliinase family protein contains Pfam ...    26   5.2  
At4g24670.1 68417.m03531 alliinase family protein contains Pfam ...    26   5.2  
At5g04410.1 68418.m00433 no apical meristem (NAM) family protein...    25   9.0  
At2g36100.1 68415.m04433 integral membrane family protein contai...    25   9.0  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 114 ELKPVNNFNLTAYQGIWYEISKF-SNESEKNGKCSSAEYKLEGD-VVKVKNVHMIDGVKK 287
           E++ V   N+  Y G WYEI+ F S    KNG  + A Y L  D  + V N    +G + 
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 288 SIEGTVKLTD 317
            IEG+    D
Sbjct: 66  FIEGSAYKAD 75


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 126 VNNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLEGDVVKVKNV 263
           V NFN++ + G WY I+   N +     C   E+  EGD   V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248


>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 210  CSSAEYKLEGDVVKVKNVHMIDGVKKSIEGTVKLTD 317
            C    Y  EGD  +  N+ ++DG  +  E T KLTD
Sbjct: 1020 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1055


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 210  CSSAEYKLEGDVVKVKNVHMIDGVKKSIEGTVKLTD 317
            C    Y  EGD  +  N+ ++DG  +  E T KLTD
Sbjct: 1034 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1069


>At1g03380.1 68414.m00317 expressed protein
          Length = 926

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 186 NESEKNGKCSSAEYKLEGDVVKVKNVHMIDGVKKSIEGTVKLTDDAN 326
           N   K G   SAE   EG   +++N+H  D +  SI+ ++ L    N
Sbjct: 763 NCHSKPGSIESAESSEEGSTKQMENLHDSDHMSNSIKSSLPLYPTVN 809


>At5g37100.1 68418.m04453 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 269

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 126 VNNFNLTAYQGIWYEISKFS-NESEKNGKCSSAEYKLE 236
           +NNF  + ++G WY I+ F    +    K SS  Y++E
Sbjct: 60  LNNFKPSLFEGKWYYIADFRLKRATSIPKYSSFNYEIE 97


>At4g23610.1 68417.m03401 expressed protein
          Length = 228

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +3

Query: 111 PELKPVNNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLEGDVVKVKNVHMIDGVKKS 290
           P L  V N N++ Y G    + +    SE      + +  L  ++VK K +  + G+ + 
Sbjct: 118 PALFIVKNVNVSFYHGELVVVGESIRRSETIPAKRTVKMNLTAEIVKTKLLASLPGLMED 177

Query: 291 IEG 299
           + G
Sbjct: 178 LNG 180


>At2g14800.1 68415.m01677 hypothetical protein
          Length = 580

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 154 KASGMKSRNFPTNLRRTVNALQLNTNWKVTW*R*RTC 264
           K  G+KS  F  N  + +   + N  W  TW R  TC
Sbjct: 175 KLKGLKSWMFKYNFEKRILEKRHNRGWLHTWSRRVTC 211


>At2g05084.1 68415.m00532 hypothetical protein
          Length = 258

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 126 VNNFNLTAYQGIWYEISKFS-NESEKNGKCSSAEYKLEGDVVKVKNVHMIDGVKKS 290
           +NNF  T ++G WY +  F    +    K +   Y++E  +   K  H+ D  K+S
Sbjct: 60  MNNFKTTLFEGKWYYLQHFRLKRATTIPKYTDFHYEIE-FMWHTKMWHVSDRAKES 114


>At4g24670.2 68417.m03532 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 440

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 129 NNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLEGDVVKVKNVHMID 275
           ++++ TAY  IW  +S  ++ES      S    K+E D  ++ N+   D
Sbjct: 37  DSWDRTAYVSIWPVVSTTASESSSLSSASCNYSKIEEDDDRIINLKFGD 85


>At4g24670.1 68417.m03531 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 440

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 129 NNFNLTAYQGIWYEISKFSNESEKNGKCSSAEYKLEGDVVKVKNVHMID 275
           ++++ TAY  IW  +S  ++ES      S    K+E D  ++ N+   D
Sbjct: 37  DSWDRTAYVSIWPVVSTTASESSSLSSASCNYSKIEEDDDRIINLKFGD 85


>At5g04410.1 68418.m00433 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein;
           supporting cDNA gi|6456750|gb|AF201456.1|AF201456
          Length = 567

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 162 WYEIS----KFSNESEKNGKCSSAEYKLEGDVVKVKNVHMIDGVKKSI 293
           WY  S    K+SN S+ N       +K  G   +++N   + G+KK++
Sbjct: 67  WYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTL 114


>At2g36100.1 68415.m04433 integral membrane family protein contains
           TIGRFAM TIGR01569 : plant integral membrane protein
           TIGR01569; contains Pfam PF04535 : Domain of unknown
           function (DUF588)
          Length = 206

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 229 LYSAEEHLPFFSDSLENFEISY 164
           +Y+AEE LPFF+  L+ F+  Y
Sbjct: 67  MYTAEETLPFFTQFLQ-FQAGY 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,624,780
Number of Sequences: 28952
Number of extensions: 87274
Number of successful extensions: 258
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)