Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0859
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    31   0.90 
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    31   0.90 
At2g40070.1 68415.m04923 expressed protein                             30   1.2  
At1g72390.1 68414.m08373 expressed protein                             29   2.1  
At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP...    29   2.1  
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,...    29   2.7  
At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ b...    29   3.6  
At5g04040.1 68418.m00384 patatin-related contains Patatin domain...    28   4.8  
At1g11660.1 68414.m01339 heat shock protein, putative strong sim...    28   4.8  
At5g41860.1 68418.m05097 expressed protein                             28   6.3  
At5g01500.1 68418.m00064 mitochondrial substrate carrier family ...    28   6.3  
At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP...    28   6.3  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    28   6.3  
At2g31050.1 68415.m03788 plastocyanin-like domain-containing pro...    27   8.4  
At1g32000.1 68414.m03937 hypothetical protein                          27   8.4  
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi...    27   8.4  

>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 176

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 25/91 (27%), Positives = 33/91 (36%)
 Frame = +2

Query: 365 ATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLA 544
           A  +G A T  PP  + AP  PTT  PA+    +      T      + A PP   P   
Sbjct: 16  AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPV 74

Query: 545 RSAVTLIPKIAVNITSVSRALPASTVAPSEP 637
            S     P  A      S   P ++  P+ P
Sbjct: 75  SSPPPASPPPATPPPVASPPPPVASPPPATP 105


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 191

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 25/91 (27%), Positives = 33/91 (36%)
 Frame = +2

Query: 365 ATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLA 544
           A  +G A T  PP  + AP  PTT  PA+    +      T      + A PP   P   
Sbjct: 16  AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPV 74

Query: 545 RSAVTLIPKIAVNITSVSRALPASTVAPSEP 637
            S     P  A      S   P ++  P+ P
Sbjct: 75  SSPPPASPPPATPPPVASPPPPVASPPPATP 105


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
 Frame = +2

Query: 296 SLSPQSPL--LTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIR 469
           S  P +P    TV   T  SL  + +T S T    KP  +S +  L ++    +A     
Sbjct: 202 SSRPSTPTSRATVSSATRPSLTNSRSTVSATT---KPTPMSRSTSLSSSRLTPTASKPTT 258

Query: 470 FRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRS 649
             +A++    T S      +S   +RS   L    A + T  SR     T+ PS+  SRS
Sbjct: 259 -STARSAGSVTRSTPSTTTKSAGPSRSTTPLSRSTARSSTPTSRP----TLPPSKTISRS 313

Query: 650 ETP 658
            TP
Sbjct: 314 STP 316


>At1g72390.1 68414.m08373 expressed protein
          Length = 1088

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
 Frame = +2

Query: 299 LSPQSPLLTVRDCTASSLMKTSATFS-GTAGTEKPPAISAAPDLPTTESPASACGLIRFR 475
           +S QSP L+      S L   S  FS G+ GT      +A  D   T  PA         
Sbjct: 302 ISAQSPRLSAGGPPQSPLSSKSGEFSGGSMGTHYGAVAAAQKDKAVTSIPAIGATQSVGS 361

Query: 476 SAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPS 631
           SA     Q    AQ   +  T +     +I  +   ++  + ++P +  +PS
Sbjct: 362 SANEAMQQRQHQAQMAAKRRTNSLPKTQVISTVGSPVSVNTISVPVNARSPS 413


>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1
           isozyme 3 (TOPP3) / phosphoprotein phosphatase 1
           identical to SP|P48483 Serine/threonine protein
           phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GB:AAA32838
           GI:166799 from [Arabidopsis thaliana]
          Length = 322

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 328 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 504
           +R+YG + DE K       W      + C P  A   E  +CM     PE K+ +E+ N 
Sbjct: 128 NRIYGFY-DECKKRYSVRVWKIFTDCFNCLPVAALIDEKILCMHGGLSPELKHLDEIRN- 185

Query: 505 FGCPAPGEVSNAG 543
              P P ++ + G
Sbjct: 186 --IPRPADIPDHG 196


>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 932

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 361 CFHQGRCRTVSNSEEWRLGAQAVSSLRTQRCEGSRSSRSSIWNLWRR--KRDRCRRFSVR 188
           C   G   ++S    +R G   + +++   CEGS SS SS    W R  K+++ R   V 
Sbjct: 31  CKFHGTSSSIS-LRSYRFGFSFMKNVKRLSCEGSSSSSSSRNENWNRTQKQNQFRPSKVV 89

Query: 187 LHR 179
           L+R
Sbjct: 90  LNR 92


>At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ
           boundaries domain protein 11 (LBD11) identical to
           SP|Q9SK08 LOB domain protein 11 {Arabidopsis thaliana}
          Length = 229

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +2

Query: 338 TASSLMKTSATF------SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSA 481
           TAS++ K + T       S T+    PP+    P  P   SP +AC ++R R A
Sbjct: 11  TASAVAKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCA 64


>At5g04040.1 68418.m00384 patatin-related contains Patatin domain
           PF01734
          Length = 825

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 21  LVPGLSSQYVFEVFISVSGRPR--RSCGPRVLQMPRRLRFLPSPHLL 155
           ++  L+S   F+    ++GR      C PR  + PR L +L SPH++
Sbjct: 324 MLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVV 370


>At1g11660.1 68414.m01339 heat shock protein, putative strong
           similarity to gb|Z70314 heat-shock protein from
           Arabidopsis thaliana and is a member of the PF|00012
           Hsp70 protein family
          Length = 773

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -1

Query: 453 ADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALN 274
           AD+GLS+       L+  G  +PA+ + ++ +F RE     RTV + +   + C L    
Sbjct: 324 ADSGLSLDQIHSVELVGSGSRIPAISKMLSSLFKRE---LGRTVNASECVARGCALQCAM 380

Query: 273 VVKVVAV 253
           +  V  V
Sbjct: 381 LSPVFRV 387


>At5g41860.1 68418.m05097 expressed protein 
          Length = 192

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 500 TDSAAQPPVRS--PTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSR 646
           T S+A+P   S  P+L+ S    +P   VN   ++R  P   +  + PF R
Sbjct: 61  TTSSAEPDPDSTNPSLSESDEVTVPVNFVNFHPINRHFPRRPLTTTAPFKR 111


>At5g01500.1 68418.m00064 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 415

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = -1

Query: 441 LSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALNVVKV 262
           LS+V K  A   AG F+  A     A +   +  +Q+  VR+G    K     A+  ++ 
Sbjct: 109 LSIVPKDAALFFAGAFAGAAAKSVTAPLDRIKLLMQTHGVRAGQQSAK----KAIGFIEA 164

Query: 261 VAVLGQVFGICG 226
           + ++G+  GI G
Sbjct: 165 ITLIGKEEGIKG 176


>At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP1
           isozyme 5 (TOPP5) / phosphoprotein phosphatase 1
           identical to SP|P48485 Serine/threonine protein
           phosphatase PP1 isozyme 5 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GI:166803
           {Arabidopsis thaliana}
          Length = 312

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 328 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 504
           +R+YG + DE K       W      + C P  A   E  +CM     PE  N E++ N 
Sbjct: 137 NRIYGFY-DECKRRFNVKLWKVFTDTFNCLPVAAVIDEKILCMHGGLSPELINVEQIKN- 194

Query: 505 FGCPAPGEVSNAG 543
                P +V +AG
Sbjct: 195 --IERPTDVPDAG 205


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
 Frame = +1

Query: 166 WKCDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVECGERTQLEPPISTPH-CSRLYG 342
           W CD        CG  L  D  D  Y    C  + +  C    ++      PH  S    
Sbjct: 234 WPCD-------VCGFLLNKDTDDLVYACLPCSLMVHRSCIYLPRVIKITRHPHRLSLTSS 286

Query: 343 IFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWAD 465
           + P +  C +  +  +    +Y C  G  Y   S+   W D
Sbjct: 287 LQPGDFSCGLCRHTVDVNCGQYSCDKGCQYAIHSKCATWRD 327


>At2g31050.1 68415.m03788 plastocyanin-like domain-containing
           protein contains plastocyanin-like domain Pfam:PF02298
          Length = 200

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 618 VLAGNALETDV-IFTAIFGMSVTAERASVGDLTGGWAAESVCY 493
           ++  NA  T + I  A+FG+SV      VGD + GW   SV Y
Sbjct: 3   LIKSNAFFTSLLILVALFGISVGGTVHKVGD-SDGWTIMSVNY 44


>At1g32000.1 68414.m03937 hypothetical protein
          Length = 181

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +1

Query: 520 PGEVSNAGSFSRHAHPEDC---RKYYICLEGVAREY 618
           PG V       RH HPE+    R ++  LEG  R Y
Sbjct: 84  PGSVKYPADLLRHLHPEEAARFRYWFRTLEGQLRAY 119


>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform II GI:1914685 from [Daucus carota]
          Length = 368

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 491 K*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAP--SEPFSRSET 655
           K +T S+A P    PT   ++      +A   T+ S A+PAS   P   +P ++S+T
Sbjct: 76  KSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSDT 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,109,451
Number of Sequences: 28952
Number of extensions: 328502
Number of successful extensions: 1023
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)