Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0858
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    26   4.3  
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    25   7.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   9.9  

>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 337 DSQEVLPPYFKPPIKPHYKPGYLNLLL 417
           DS+E++P  + P IK  + PG L++LL
Sbjct: 122 DSEEIIPKVYLPLIKKFW-PGPLSILL 147


>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -1

Query: 657 VPYGMMRRAVLRRIYRGIGNAAHGEDPARNSVGRVYGLIYSSIPLSQATGSA 502
           +P+G +    + R YR +G A      ++ ++  VYG  Y S+ + ++  +A
Sbjct: 68  IPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEVYGAKYMSLHVRKSNRAA 119


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 504 PNPSLATKGSTSKLTHRHGPLSFSPD--LLRGPRFRS 608
           PN +L T  +T KL      L  SPD  LLRG + R+
Sbjct: 332 PNNNLYTFDATLKLLPSDRELPLSPDQLLLRGAQLRN 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,775
Number of Sequences: 5004
Number of extensions: 54954
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)