BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0858 (669 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 26 4.3 SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc... 25 7.5 SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 9.9 >SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr 3|||Manual Length = 408 Score = 26.2 bits (55), Expect = 4.3 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +1 Query: 337 DSQEVLPPYFKPPIKPHYKPGYLNLLL 417 DS+E++P + P IK + PG L++LL Sbjct: 122 DSEEIIPKVYLPLIKKFW-PGPLSILL 147 >SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 177 Score = 25.4 bits (53), Expect = 7.5 Identities = 13/52 (25%), Positives = 27/52 (51%) Frame = -1 Query: 657 VPYGMMRRAVLRRIYRGIGNAAHGEDPARNSVGRVYGLIYSSIPLSQATGSA 502 +P+G + + R YR +G A ++ ++ VYG Y S+ + ++ +A Sbjct: 68 IPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEVYGAKYMSLHVRKSNRAA 119 >SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1258 Score = 25.0 bits (52), Expect = 9.9 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = +3 Query: 504 PNPSLATKGSTSKLTHRHGPLSFSPD--LLRGPRFRS 608 PN +L T +T KL L SPD LLRG + R+ Sbjct: 332 PNNNLYTFDATLKLLPSDRELPLSPDQLLLRGAQLRN 368 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,726,775 Number of Sequences: 5004 Number of extensions: 54954 Number of successful extensions: 136 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 136 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 305854096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -