Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0858
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0127 - 17508808-17509029,17509195-17509938,17510004-175102...    30   1.5  
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117...    30   1.5  
03_02_0341 - 7643426-7643973,7644340-7644505                           29   3.3  
03_01_0549 - 4102098-4102198,4102394-4102544,4102629-4102760,410...    29   3.3  
02_01_0008 - 50576-50671,50767-50829,50918-50961,51048-51129,522...    29   4.4  
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609...    28   5.9  
03_04_0122 + 17465804-17465893,17466028-17466147,17466287-174663...    28   7.7  

>03_04_0127 -
           17508808-17509029,17509195-17509938,17510004-17510242,
           17510334-17510436,17510666-17510770,17510838-17510906,
           17510998-17511402,17512048-17512156,17512240-17512295
          Length = 683

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 547 VNLLVDPFVASDGFGVDGDRESCWF 473
           + ++ DP VASDGF  + +   CWF
Sbjct: 610 MEIMKDPQVASDGFTYEAEAIRCWF 634


>03_01_0149 -
           1175689-1176258,1176345-1176509,1176631-1177539,
           1178179-1178378,1178505-1178605,1178747-1179369,
           1179451-1179546,1179637-1179798,1179889-1180068,
           1180173-1180323,1180408-1180641,1180753-1180913,
           1181041-1181163,1181261-1181421,1181655-1181877,
           1181952-1182346,1182461-1182671,1183536-1184522
          Length = 1883

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 265 PTLQTETHDCFTAEIGRVVVPTRADSQEVLPPYFKPPI 378
           P + T   D F AEI R++    A+S    PP   PP+
Sbjct: 48  PAMDTGADDGFVAEIDRILESINAESSPAPPPPPPPPL 85


>03_02_0341 - 7643426-7643973,7644340-7644505
          Length = 237

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 316 VVVPTRADSQEVLPPYFKPPIK-PHYKP 396
           V+VP + D    LPP  +PP+  P +KP
Sbjct: 173 VIVPPKHDHDHSLPPVHEPPVTVPDHKP 200


>03_01_0549 -
           4102098-4102198,4102394-4102544,4102629-4102760,
           4102988-4103162,4103494-4103945,4104042-4104121,
           4104342-4104408,4104709-4104814,4104924-4105033,
           4105133-4105201,4105661-4105771,4106263-4106427,
           4106639-4106725,4106974-4107027,4107101-4107240,
           4107820-4107897,4108066-4108720
          Length = 910

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 633 AVLRRIYRGIGNAAHGEDPARNSVGRVYG-LIYSSIPLSQATGSAWTVTGSHV 478
           + + +I R + +A   E P +     + G  +Y+ + LS AT S W   G+H+
Sbjct: 445 STIAKIVRMVEDAQAREAPVQRLADSIAGPFVYTVMTLSAATFSFWYYIGTHI 497


>02_01_0008 -
           50576-50671,50767-50829,50918-50961,51048-51129,
           52205-52371,52502-52654,52780-52960,53452-53540,
           53599-53799,54804-55147,55397-55626
          Length = 549

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 274 QTETHDCFTAEIGRVVVPTRADSQEVLPPYFKPPIKPHYKPGY 402
           Q + HD  T +  + ++P+R  S + +P   KP +  H  P Y
Sbjct: 138 QQQQHDDDTRKSSQYLLPSRKPSLQQIPEDQKPLVPAHEVPAY 180


>07_01_1104 -
           10160493-10160599,10160632-10160637,10160930-10160975,
           10161053-10161190,10161275-10161679,10163193-10163330,
           10163401-10163482,10163596-10163943,10164294-10164655,
           10165154-10165209,10166428-10166558,10166564-10166628,
           10169191-10169631
          Length = 774

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 137 LMVDRAHSPVLSGYWSPYTSTT*LRHP 217
           L  D++H P   G W+  +ST   RHP
Sbjct: 450 LQFDKSHRPAYYGTWTMKSSTVSARHP 476


>03_04_0122 +
           17465804-17465893,17466028-17466147,17466287-17466317,
           17466978-17467153,17468051-17468142,17468259-17468340,
           17468498-17468566,17468655-17468759,17471246-17471342,
           17471438-17471676,17472191-17472949,17473079-17473297
          Length = 692

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 547 VNLLVDPFVASDGFGVDGDRESCWF 473
           + ++ DP VASDGF  +G+    WF
Sbjct: 620 MEIMKDPQVASDGFTYEGEAIRRWF 644


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,124,552
Number of Sequences: 37544
Number of extensions: 380257
Number of successful extensions: 1085
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)