Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0858
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_38446| Best HMM Match : TPR_1 (HMM E-Value=9.5e-17)                 29   4.5  
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)                       29   4.5  
SB_10207| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1888

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 396  WLSEFASELLKIFSIVLEI*KKQN*LNQHDSRSPSTPNPSLATKGSTSKLTHRHGPLSFS 575
            +LS F   L  + +++ ++ K  + L   D R P T     +++G  + L    GP+ + 
Sbjct: 1294 FLSRFIPNLSSVSAVLWDLTKSSSSLQYFDGRKPVTIQVDASSRGLGATLLQEKGPVEYR 1353

Query: 576  PDLL 587
              LL
Sbjct: 1354 SKLL 1357


>SB_38446| Best HMM Match : TPR_1 (HMM E-Value=9.5e-17)
          Length = 147

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
 Frame = -2

Query: 182 SSNHLTPGCELGQPSKQQQKKRHGIHELEIA*I---IRG-------RFGRLNETYSCWQY 33
           SS H   G  LGQ  + ++ ++H +  LE+  +   IRG       R+G+LNE   C+  
Sbjct: 59  SSIHFNLGNMLGQEKRFKEAEKHFLRALELNPVQPEIRGNLGVLYHRWGKLNEAEKCYME 118

Query: 32  DNAVD 18
             A D
Sbjct: 119 ALAAD 123


>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 687

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
 Frame = -2

Query: 182 SSNHLTPGCELGQPSKQQQKKRHGIHELEIA*I---IRG-------RFGRLNETYSCWQY 33
           SS H   G  LGQ  + ++ ++H +  LE+  +   IRG       R+G+LNE   C+  
Sbjct: 599 SSIHFNLGNMLGQEKRFKEAEKHFLRALELNPVQPEIRGNLGVLYHRWGKLNEAEKCYME 658

Query: 32  DNAVD 18
             A D
Sbjct: 659 ALAAD 663


>SB_10207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = -1

Query: 639 RRAVLRRIYRGIGNAAHGEDPARNSVGRVYGLIYSSIPLSQATGSAWTVTGSHVGLVSSV 460
           ++  LR +   + +   G +  R      +G+I+  +P S +  SA +V G   GL+ S+
Sbjct: 805 KKKTLRVVQSSVASEPQGREGLR--ADDAFGIIHRPVPESNSAWSASSVIGV-AGLLVSL 861

Query: 459 FFISPRR 439
           F +  RR
Sbjct: 862 FGLYTRR 868


>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 480 HDSRSPSTPNPSLATKGSTSKLTHRHGPLSFSPDLLRGP 596
           H S +  +P P L    +  K+TH HGP    P L R P
Sbjct: 170 HRSEACCSPPPLLYIPATAQKVTHLHGP----PTLERAP 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,905,299
Number of Sequences: 59808
Number of extensions: 431998
Number of successful extensions: 1158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)