Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0858
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 29 2.3
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 29 2.3
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 29 2.3
Z81593-4|CAB04742.1| 334|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81593-5|CAB04743.1| 332|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z81593-3|CAB04741.1| 332|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z81541-2|CAB04412.2| 152|Caenorhabditis elegans Hypothetical pr... 28 5.2
AL110477-1|CAB54325.1| 331|Caenorhabditis elegans Hypothetical ... 28 6.9
AL132847-5|CAB60384.2| 280|Caenorhabditis elegans Hypothetical ... 27 9.1
AL110500-23|CAB63414.1| 280|Caenorhabditis elegans Hypothetical... 27 9.1
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 337 DSQEVLPPYFKPPIKPHYKPGYLNLLLNY*KFSVSSWRYKKNRTN*TNMTPGH 495
D LPP F + P +N L N ++ + + Y+KNR T PG+
Sbjct: 708 DEGSSLPPPFNIIVTPKSLIYVMNCLFNTVRWLLGKYTYQKNRNRATIRRPGY 760
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 337 DSQEVLPPYFKPPIKPHYKPGYLNLLLNY*KFSVSSWRYKKNRTN*TNMTPGH 495
D LPP F + P +N L N ++ + + Y+KNR T PG+
Sbjct: 688 DEGSSLPPPFNIIVTPKSLIYVMNCLFNTVRWLLGKYTYQKNRNRATIRRPGY 740
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 337 DSQEVLPPYFKPPIKPHYKPGYLNLLLNY*KFSVSSWRYKKNRTN*TNMTPGH 495
D LPP F + P +N L N ++ + + Y+KNR T PG+
Sbjct: 688 DEGSSLPPPFNIIVTPKSLIYVMNCLFNTVRWLLGKYTYQKNRNRATIRRPGY 740
>Z81593-4|CAB04742.1| 334|Caenorhabditis elegans Hypothetical
protein T20B3.4 protein.
Length = 334
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 82 IIHAISSSCIP--CLFFCCCFDG*PSSQPGVKWLLEPIHIYNVI 207
++H IS IP C C F P S VKW + +H+++ +
Sbjct: 21 VLHVISYISIPVHCYGGFCVFAKTPISMQSVKWSMMNLHLFSCL 64
>Z81593-5|CAB04743.1| 332|Caenorhabditis elegans Hypothetical
protein T20B3.5 protein.
Length = 332
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 82 IIHAISSSCIPCL---FFCCCFDG*PSSQPGVKWLLEPIHIYNVI 207
++HAIS +P F+C P+ Q VKW + +H+++ I
Sbjct: 21 VLHAISVISVPVYVYGFYCVLLKTPPTMQ-SVKWSMMNVHVFSCI 64
>Z81593-3|CAB04741.1| 332|Caenorhabditis elegans Hypothetical
protein T20B3.3 protein.
Length = 332
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 82 IIHAISSSCIPCLFF--CCCFDG*PSSQPGVKWLLEPIHIYNVI 207
++H IS IP F C F P S VKW + +H+++ +
Sbjct: 21 VLHVISFISIPIHVFGVFCVFFKTPISMQSVKWSMMNVHLFSCL 64
>Z81541-2|CAB04412.2| 152|Caenorhabditis elegans Hypothetical
protein F48F5.2 protein.
Length = 152
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 477 QHDSRSPSTPNPSLATKGSTSKLTHRHGPLSFSP--DLLRGPR 599
Q +R PS+ S +GS+S H HG S P DLLR R
Sbjct: 84 QLHARRPSSLKVSGPVQGSSSSHPHNHGSPSSEPNTDLLRNVR 126
>AL110477-1|CAB54325.1| 331|Caenorhabditis elegans Hypothetical
protein Y113G7B.2 protein.
Length = 331
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 82 IIHAISSSCIPCLF--FCCCFDG*PSSQPGVKWLLEPIHIYNVI 207
++H IS IP F C PS+ VKW + +H+++ +
Sbjct: 21 VLHTISIISIPIYIYGFFCILCKTPSTMNSVKWSMINVHVFSCL 64
>AL132847-5|CAB60384.2| 280|Caenorhabditis elegans Hypothetical
protein Y48G10A.1 protein.
Length = 280
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 541 LLVDPFVASDGFGVDGDRESCWFS*FCFFYISKTILKIFNN 419
++V P + G VDGD ES F FY++ T+ K N
Sbjct: 77 VVVHPDTSPRGVDVDGDSESWDFGKGAGFYVNATVEKWAKN 117
>AL110500-23|CAB63414.1| 280|Caenorhabditis elegans Hypothetical
protein Y48G10A.1 protein.
Length = 280
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 541 LLVDPFVASDGFGVDGDRESCWFS*FCFFYISKTILKIFNN 419
++V P + G VDGD ES F FY++ T+ K N
Sbjct: 77 VVVHPDTSPRGVDVDGDSESWDFGKGAGFYVNATVEKWAKN 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,117,391
Number of Sequences: 27780
Number of extensions: 313424
Number of successful extensions: 872
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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