Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0858
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28580.1 68415.m03472 hypothetical protein contains Pfam prof...    30   1.6  
At3g61390.2 68416.m06872 U-box domain-containing protein several...    29   2.1  
At4g24660.1 68417.m03530 zinc finger homeobox family protein / Z...    29   2.8  
At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat...    29   3.7  
At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putat...    29   3.7  
At2g33390.1 68415.m04093 expressed protein                             29   3.7  
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co...    28   4.9  
At1g72820.1 68414.m08419 mitochondrial substrate carrier family ...    27   8.5  

>At2g28580.1 68415.m03472 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 468

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 327 YPRRLTRGPTTLFQTAYKASLQTWLSEFASELLKIFSIVLEI*KKQN*LNQHDSRSPSTP 506
           Y  RL R   TL +  +K  L T  +  A+ +L + +++  +      + Q+D++SP  P
Sbjct: 404 YDNRLNRSVGTLRRVYFK-DLWTGTATIAAVVLLVLTLIQTVASILQVMMQNDNKSPPPP 462

Query: 507 NPS 515
            PS
Sbjct: 463 APS 465


>At3g61390.2 68416.m06872 U-box domain-containing protein several
           hypothetical proteins - Arabidopsis thaliana
          Length = 435

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 544 NLLVDPFVASDGFGVDGDRESCWF 473
           +++ DP VA+DGF  +G+  S WF
Sbjct: 364 DIMEDPHVAADGFTYEGEAISRWF 387


>At4g24660.1 68417.m03530 zinc finger homeobox family protein /
           ZF-HD homeobox family protein hypothetical protein
           T8K22.16, Arabidopsis thalianachromosome II BAC T8K22,
           PATX:G3184285
          Length = 220

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 352 LPPYFKPPIKPHYKPGYLNL 411
           +P Y+  P +PH  PGYL+L
Sbjct: 109 VPTYYNRPPQPHQPPGYLHL 128


>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
           (PAA1) nearly identical to gi:2668492; contains Pfam
           heavy-metal-associated domain PF00403
          Length = 949

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 618 IYRGIGNAAHGEDPARNSVGRVYG-LIYSSIPLSQATGSAWTVTGSHV 478
           I R +  A   E P +  V +V G   Y  + LS AT + W + G+HV
Sbjct: 481 IIRLVEEAQSREAPVQQLVDKVAGRFTYGVMALSAATFTFWNLFGAHV 528


>At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putative
           (PAA1) nearly identical to gi:2668492; contains Pfam
           heavy-metal-associated domain PF00403
          Length = 949

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 618 IYRGIGNAAHGEDPARNSVGRVYG-LIYSSIPLSQATGSAWTVTGSHV 478
           I R +  A   E P +  V +V G   Y  + LS AT + W + G+HV
Sbjct: 481 IIRLVEEAQSREAPVQQLVDKVAGRFTYGVMALSAATFTFWNLFGAHV 528


>At2g33390.1 68415.m04093 expressed protein 
          Length = 98

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 638 EEQCFAESTAGSETRPTEKIRRETQW 561
           E QC      G  +R T+KI+R  QW
Sbjct: 38  ESQCLLPPRKGGMSRSTDKIKRTVQW 63


>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
            domain-containing protein contains Pfam profile PF01426:
            BAH domain
          Length = 1611

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 504  PNPSLATKGSTSKLTHRHGPLSFSPDLLRGP 596
            P P +AT+G    L    G  SFSP+  RGP
Sbjct: 1420 PFPMIATRGPQRMLGPTTGVSSFSPEGYRGP 1450


>At1g72820.1 68414.m08419 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 349

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 660 KVPYGMMRRAVLRRIYRGIGNAAHGEDPAR 571
           K  + ++R   LR +YRG G +  G  PAR
Sbjct: 66  KTAFTLVRHEGLRGLYRGFGTSLMGTIPAR 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,369,773
Number of Sequences: 28952
Number of extensions: 297100
Number of successful extensions: 969
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)