Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0856
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    29   0.57 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   4.0  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    26   4.0  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   7.0  

>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 373 KLDLRYFNIHQCPFSYYK-LGCNIPVLF*FVMCSPASLRFFRLRTSPPRLG 224
           K+D++  N+  C FS +K LGC  P     +  SP  L    LR++PP +G
Sbjct: 199 KIDVQDLNVSACAFSCHKGLGC--PTGLGVLYVSP--LAISELRSTPPFVG 245


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 518 SSISKSGSLPSASRGYLSSSVT 583
           SS+S S S+PS+S  Y SSS+T
Sbjct: 142 SSLSHSSSVPSSSSSYHSSSMT 163


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -1

Query: 579 TEELKYPLEADGREPDLDIELS*YRCVS--PICMEF-VASSIATAPHFESI 436
           +E+L+Y  ++ G   DLD++L+ Y   S    C+ F   SSI+ A H   I
Sbjct: 107 SEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAAHSAKI 157


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 437 MLSKCGAVAMEDATNSMHIGLTHLY*DSSISKSGSL 544
           M+ + G + + DATNS H    HLY    ISK   +
Sbjct: 224 MIHENGVIGILDATNSTHERRKHLY--DRISKEADI 257


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 484 HAYRTNASILRQLNIQIRLSTICLKR--IFEFFGHIARTSGD 603
           H YR NA  LRQL  +      CL R  + E     A +SGD
Sbjct: 177 HEYRGNAKRLRQLRDEHACKIGCLTRAIMSEGVSDAASSSGD 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,105
Number of Sequences: 5004
Number of extensions: 49585
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)