Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0856
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032...    28   5.4  
04_01_0601 + 7918220-7918559,7919082-7919158                           28   7.2  

>04_04_1676 -
           35302498-35302836,35302911-35302997,35303063-35303286,
           35303375-35303675,35303762-35303860,35304895-35305032,
           35305108-35305326
          Length = 468

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 445 EMWCCGN--GRCYEFHAYRTNASILRQL 522
           E+W C +  G+CY F AY+    +L+++
Sbjct: 135 EVWLCHSFGGKCYNFAAYQRAMDVLKEI 162


>04_01_0601 + 7918220-7918559,7919082-7919158
          Length = 138

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = -1

Query: 204 AEA*PCSASAMNKTRSRRSMNSAAWIKSAMLILMVRGVNTAVTNDTRLHSNETINKSIQG 25
           AE+  C  +  N++    +M S++  K+A ++    G+N  +   + L +N T  + ++G
Sbjct: 2   AESALCHTAKANRSVEHGTMRSSSTEKTASVVSPWMGLNLLLRLSSALIANRTREQLVEG 61

Query: 24  AQ 19
           A+
Sbjct: 62  AR 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,980,415
Number of Sequences: 37544
Number of extensions: 331262
Number of successful extensions: 675
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)