Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0856
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_56198| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 424  RHRIDAFEMWCCGNGRCYEFHAYRTNASILRQLN 525
            +HR    E WC  N RCY + A + NA    QLN
Sbjct: 1202 QHRSGVEESWCKDNERCYAYSADQCNADEWVQLN 1235


>SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 81  PPCLLRVPLK*ALPI*SKPPNSSNAVTEFCSLQTRNTVTPRRYLYTKIP 227
           PP    +PL  A    SKPP+SS ++ +     T NT T    + +K+P
Sbjct: 714 PPTSTTIPLLTADTTTSKPPSSSTSIFQAAPATTSNTTTQIPAVASKLP 762


>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 901

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 457 CGNGRCYEFHAYRTNASILRQLNIQIRLSTICLKRIFEFFGHIAR 591
           C     Y  HAY    + L++ + +IRLS  CL+ I E FG   R
Sbjct: 39  CKKSELYVEHAYHNLLTQLKKDHAEIRLS--CLQIIRELFGRSHR 81


>SB_56198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -2

Query: 344 PMSVFVLQTRLQHTCSFLI 288
           PM+VF+LQT+LQ    FLI
Sbjct: 75  PMAVFLLQTQLQTRVGFLI 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,299,472
Number of Sequences: 59808
Number of extensions: 389569
Number of successful extensions: 805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)