Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0856
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    73   3e-15
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   3.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.6  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 72.5 bits (170), Expect = 3e-15
 Identities = 38/65 (58%), Positives = 45/65 (69%)
 Frame = +2

Query: 110 MSIADLIQAAEFIERRDRVLFIADAEHGYASALPIYEDXXXXXXXXXXXXSQGSRTTHNE 289
           MSIA L+QAAE+IERR+R     +AEHGYAS +P+ +D            SQGSRTTHNE
Sbjct: 1   MSIAALLQAAEYIERRER-----EAEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTHNE 55

Query: 290 LEKNR 304
           LEKNR
Sbjct: 56  LEKNR 60


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -2

Query: 572 NSNILLRQMVESLIWILSCLNIDALVRYA 486
           N  +     V +  W++ C NI A+ + A
Sbjct: 105 NDTVSFTTTVSARFWLMDCRNIGAVPKMA 133


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 322 CNTKTDIGEY 351
           CN+KT+ GEY
Sbjct: 219 CNSKTNTGEY 228


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 322 CNTKTDIGEY 351
           CN+KT+ GEY
Sbjct: 219 CNSKTNTGEY 228


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 328 YYKLGCNIPVLF*FV 284
           YY++G N+P  F F+
Sbjct: 310 YYEVGSNVPFNFKFI 324


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 445 EMWCCGNGRCYEFHAYRTNA 504
           EM C    +CY    + TNA
Sbjct: 758 EMTCPAGCKCYNDRTWNTNA 777


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,493
Number of Sequences: 438
Number of extensions: 3587
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)