Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0856
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36550.1 68417.m05190 U-box domain-containing protein low sim...    31   0.65 
At1g77810.2 68414.m09061 galactosyltransferase family protein co...    27   7.9  
At1g77810.1 68414.m09060 galactosyltransferase family protein co...    27   7.9  

>At4g36550.1 68417.m05190 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 577

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 458 VAMEDATNSMHIGLTHLY*DSSISKSGSLPSASRGYLSSSVTLPERAVTILKN 616
           V  E+A N + +   H +  S I+ SGSL S  +   S +  L E+A+  LKN
Sbjct: 336 VVAEEALNILEVLSNHPHGPSKITSSGSLSSLLKIVESQAEHLQEQAMITLKN 388


>At1g77810.2 68414.m09061 galactosyltransferase family protein
           contains Pfam profile PF01762: Galactosyltransferase
          Length = 387

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 186 SASAMNKTRSRRSMNSAAWIKSAMLILMVRGVNTAVTNDTRLHS 55
           S S ++ TRS + M   +       + MV G+NTA ++  R  S
Sbjct: 93  SVSTLSSTRSSQEMVDGSETNPRKKVFMVMGINTAFSSRKRRDS 136


>At1g77810.1 68414.m09060 galactosyltransferase family protein
           contains Pfam profile PF01762: Galactosyltransferase
          Length = 393

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 186 SASAMNKTRSRRSMNSAAWIKSAMLILMVRGVNTAVTNDTRLHS 55
           S S ++ TRS + M   +       + MV G+NTA ++  R  S
Sbjct: 93  SVSTLSSTRSSQEMVDGSETNPRKKVFMVMGINTAFSSRKRRDS 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,451,873
Number of Sequences: 28952
Number of extensions: 263007
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)