Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0855
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 177 1e-45
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 44 3e-05
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 31 0.24
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 28 1.3
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 28 1.3
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 28 1.7
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 3.9
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.7
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 8.9
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 25 8.9
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 177 bits (431), Expect = 1e-45
Identities = 92/202 (45%), Positives = 120/202 (59%)
Frame = +1
Query: 1 VRLAATQALLNSLEFTRANFEKENERNFIMEVVCEATQSSDMRISVAALQCLVKILSLYY 180
VRLAA AL +SLEF R NF E ERN+IM+VVCEATQS + I AA CLVKI+ LYY
Sbjct: 190 VRLAALGALYDSLEFVRENFNNEYERNYIMQVVCEATQSPEASIQTAAFGCLVKIMHLYY 249
Query: 181 QHMEPYMGQALFPITLEAMKSDIDEISLQGIEFWSNVSXXXXXXXXXXXXXXXXGRPPTR 360
M YM +ALF +T + M + ++++LQ +EFWS V P R
Sbjct: 250 DTMPFYMEKALFALTTQGMYNTNEQVALQAVEFWSTVCEEEIEVNLEIQEAQDLNEVPAR 309
Query: 361 TSRFYARGALQYLAPVLMQKLTKQDDSDDELEWNPSKAASVCLMLLSNCCEDEIVPHVLP 540
+ +AR A + PVL++ L QD+ DE +WN S AA+ CL L + D IV VL
Sbjct: 310 QNHGFARAAAADILPVLLKLLCNQDEDADEDDWNISMAAATCLQLFAQVVGDLIVNPVLA 369
Query: 541 FINCNIKSENWRYREAALMAFG 606
F+ NI++ +W REAA+MAFG
Sbjct: 370 FVEQNIQNPDWHQREAAVMAFG 391
Score = 49.6 bits (113), Expect = 5e-07
Identities = 24/52 (46%), Positives = 29/52 (55%)
Frame = +2
Query: 605 GSILGGLGANTLKPLVENAMPTLIEAMYDSSIAVRDTAAWTFGRIXEIVPEA 760
GS+L G L PLV A+P LI M D I V+DT AW G+I V +A
Sbjct: 391 GSVLEGPNVAMLTPLVNQALPVLINMMVDPVIFVKDTTAWALGQISSFVADA 442
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/58 (29%), Positives = 36/58 (62%)
Frame = +1
Query: 433 DDSDDELEWNPSKAASVCLMLLSNCCEDEIVPHVLPFINCNIKSENWRYREAALMAFG 606
+D D ++WN K ++ L +LS+ + ++ +LP + ++ SE+W+ +EA ++A G
Sbjct: 382 EDDDAFMDWNLRKCSAAALDVLSSFWKQRLLEIILPHLKQSLTSEDWKVQEAGVLAVG 439
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 596 WHLGSILGGLGANTLKPLVENAMPTLIEAMYDSSIAVRDTAAWTFGRI 739
W L ++ G T + NA+P + + S VR+ A W G I
Sbjct: 143 WALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALGNI 190
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Frame = +1
Query: 10 AATQALLNSLEFTRANFE---KENERNFIMEVVCEATQSSDMRISVAALQCLVKIL 168
AA Q+LLN+ F ANFE KE+ +NF ++++ E ++ +RI + L CLV L
Sbjct: 437 AAHQSLLNTNMFNDANFEFMVKEHIKNF-LKLLKE--HNNPVRI-IKLLDCLVLTL 488
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 28 LNSLEFTRANFEKENERNFIMEVVCEATQSSDMRISVAALQCLVKI 165
L+ E + E+E+N +CE SSD I +A L+ L ++
Sbjct: 366 LDISEMISSYLHVEDEKNVFYLALCEFLNSSDYSILIATLRTLARL 411
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 391 QYLAPVLMQKLTKQDDSDDELEWNPSKAASVCLM 492
+++ P + ++L DDS + WNP+ A C M
Sbjct: 195 KFIPPGVGKRLATVDDSGTLIVWNPATGAPECRM 228
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 490 MLLSNCCEDEIVPHVL-PFINCNIKSENWRYREAALMAFGFNSWWSWS*HSETIS 651
+L +N + E +P+++ P + NI+S +W+ A M F + SW H +S
Sbjct: 1567 ILKANVKQIEELPYIMIPRLESNIQSLSWKQHIATKMIQHFLAIGSWLFHRIQLS 1621
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 346 RPPTRTSRFYARGALQYLAP 405
+PP +TS+FYAR Y P
Sbjct: 107 KPPYQTSQFYARPQSSYAPP 126
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 602 LGSILGGLGANTLKPLVENAMPTLIEAMYDSSI 700
+G ++G + A+ ++ + MPT + AM DSSI
Sbjct: 117 IGDLVGYVAASFMRGIRFIQMPTTLLAMVDSSI 149
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/48 (27%), Positives = 19/48 (39%)
Frame = +2
Query: 596 WHLGSILGGLGANTLKPLVENAMPTLIEAMYDSSIAVRDTAAWTFGRI 739
W L +I G T + A+P I+ + VR+ W G I
Sbjct: 142 WALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGNI 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,759
Number of Sequences: 5004
Number of extensions: 51973
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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