Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0855
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                116   2e-33
SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)                  41   0.001
SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_53501| Best HMM Match : YTV (HMM E-Value=7.8)                       28   7.2  

>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score =  116 bits (280), Expect(2) = 2e-33
 Identities = 51/88 (57%), Positives = 64/88 (72%)
 Frame = +1

Query: 343 GRPPTRTSRFYARGALQYLAPVLMQKLTKQDDSDDELEWNPSKAASVCLMLLSNCCEDEI 522
           GRPP  TSRFYA+GAL +L P +   L  Q++ DDE +WNP KAA VCLMLL+ CCED I
Sbjct: 227 GRPPENTSRFYAKGALAFLIPPITNCLINQEEYDDEDDWNPCKAAGVCLMLLAQCCEDAI 286

Query: 523 VPHVLPFINCNIKSENWRYREAALMAFG 606
           V  VL F+N N  S +W+ ++AA+MAFG
Sbjct: 287 VQPVLEFVNVNFASPSWKNKDAAIMAFG 314



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 27/53 (50%), Positives = 36/53 (67%)
 Frame = +2

Query: 605 GSILGGLGANTLKPLVENAMPTLIEAMYDSSIAVRDTAAWTFGRIXEIVPEAA 763
           G+IL G    TL+P VENA+P + + M D S+ VRD+AAW  GR+ EI+P  A
Sbjct: 314 GAILEGPDPKTLQPFVENALPVIAQQMKDESVVVRDSAAWVLGRVCEIMPHIA 366



 Score = 44.4 bits (100), Expect(2) = 2e-33
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
 Frame = +1

Query: 79  NFIMEVVCEATQSSDM--RISVAALQCLVKILSLYYQHMEPYMGQALFPITLEAMKSDID 252
           N I+ V+ +  +  +    I +AA   L+  L    Q+ E         IT+EA+KSD D
Sbjct: 121 NKILTVIIQGMRKEEPSNHIRLAATTALLNSLEFTKQNFEK-------AITVEAIKSDTD 173

Query: 253 EISLQGIEFWSNV 291
           E++LQGIEFWS V
Sbjct: 174 EVALQGIEFWSTV 186



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +1

Query: 1   VRLAATQALLNSLEFTRANFEK 66
           +RLAAT ALLNSLEFT+ NFEK
Sbjct: 140 IRLAATTALLNSLEFTKQNFEK 161


>SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)
          Length = 492

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +1

Query: 433 DDSDDELEWNPSKAASVCLMLLSNCCEDEIVPHVLPFINCNIKSENWRYREAALMAFG 606
           DD D   +WN  K ++  L +L+N   D+++P +LP +   +   +W  +E+ ++  G
Sbjct: 271 DDDDALSDWNLRKCSAAGLDVLANVFRDDLLPVLLPILKDTLFHPDWESKESGILVLG 328


>SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 373 YARGALQYLAPVLMQKLTKQDDSDDELEWNPSKAASVCLMLLSNCCEDEIVPH 531
           Y +GA Q  +  L  ++  +  +++ L +NP K   + +++  N  E+E + H
Sbjct: 154 YPKGAGQLFSNPLRHRINPKQFTEESLSYNPLKDTYIPVVIQINVEEEEYLGH 206


>SB_53501| Best HMM Match : YTV (HMM E-Value=7.8)
          Length = 128

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = +1

Query: 4   RLAATQALLNSLEFTRANFEKENERNFIMEVVCEATQSSDMRISVAALQCLV-KILSLYY 180
           RL     ++ ++E     +    ERN + + VCEA +S+ + ++ AA + L+ K  +  +
Sbjct: 29  RLYELPVVMAAMEQLSQIYGNVKERNAVTKKVCEAGEST-LSVATAASKPLIQKATNTAF 87

Query: 181 QHMEPYMGQALFPI-TLEAMKSD 246
              +P +G+   P+ T++ + S+
Sbjct: 88  TLAKPVIGEVNDPVSTIDNVASE 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,428,911
Number of Sequences: 59808
Number of extensions: 386137
Number of successful extensions: 962
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)