Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0855
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta... 219 1e-57
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 37 0.014
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 31 1.2
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical p... 29 3.6
Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ... 28 8.3
>AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta
family protein 1 protein.
Length = 896
Score = 219 bits (536), Expect = 1e-57
Identities = 105/203 (51%), Positives = 135/203 (66%), Gaps = 1/203 (0%)
Frame = +1
Query: 1 VRLAATQALLNSLEFTRANFEKENERNFIMEVVCEATQSSDMRISVAALQCLVKILSLYY 180
VR AAT ALLNSLEFT NF E ERN IM+VVCE+T SSD R+ VAALQCLV+I+ LYY
Sbjct: 196 VRFAATNALLNSLEFTNTNFSNEAERNIIMQVVCESTSSSDQRVKVAALQCLVRIMQLYY 255
Query: 181 QHMEPYMGQALFPITLEAMKSDIDEISLQGIEFWSNVSXXXXXXXXXXXXXXXXGRP-PT 357
+HM YMG ALF ITL AMKS E+++QG+EFWS V+ G P P
Sbjct: 256 EHMLSYMGSALFQITLSAMKSQEPEVAMQGMEFWSTVAEEEFDLYMTYEDEVERGAPNPK 315
Query: 358 RTSRFYARGALQYLAPVLMQKLTKQDDSDDELEWNPSKAASVCLMLLSNCCEDEIVPHVL 537
S + A ++ PVL++ + DD DD+ +W P+KAA VCLML + C D+IV HV+
Sbjct: 316 CASLRFMEQAASHVCPVLLEAMAHHDDGDDDDDWTPAKAAGVCLMLAAQCVRDDIVNHVI 375
Query: 538 PFINCNIKSENWRYREAALMAFG 606
PF + ++ +W+Y+EAA+MAFG
Sbjct: 376 PFFK-HFQNPDWKYKEAAIMAFG 397
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +2
Query: 605 GSILGGLGANTLKPLVENAMPTLIEAMYDSSIAVRDTAAWTFGRIXEIVPEAA 763
GSIL G L P+ + A+P ++ AM D ++ VRDTAAW+ GR+ + E A
Sbjct: 397 GSILDGPDPKKLLPMAQEALPAIVAAMCDKNVNVRDTAAWSLGRVIDTCSELA 449
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 37.1 bits (82), Expect = 0.014
Identities = 13/60 (21%), Positives = 33/60 (55%)
Frame = +1
Query: 427 KQDDSDDELEWNPSKAASVCLMLLSNCCEDEIVPHVLPFINCNIKSENWRYREAALMAFG 606
+ DD D +WN + ++ L +L++ +++ + P + + ++NW +E+ ++A G
Sbjct: 353 EDDDDDGGGDWNIRRCSAASLDVLASIFGKDLLDKLFPLLKDTLMNDNWLVKESGILALG 412
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +1
Query: 391 QYLAPVLMQKLTKQDDSDDELEWNPSKAASVCLMLLSNCCEDEIVPHVLPFI 546
Q++ P++ + L +S ++ + ++ + L CC +E+ PH+ F+
Sbjct: 737 QFIGPII-EPLIVVINSQQNMQRTLLENTAITIGRLGQCCGEELAPHISRFV 787
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +1
Query: 373 YARGALQYLAPVLMQKLTKQDDS---------DDELEWNPSKAASVCLMLLSNCCEDE-- 519
YA GAL + L+ +T+ DD ++E ++ + + CC +
Sbjct: 292 YAPGALGPILETLLSCMTEMDDDVLNEWLNEIEEEEDYEDIPIIAESAIDRVACCINGKV 351
Query: 520 IVPHVLPFINCNIKSENWRYREAALMAF 603
++P LP + + SE+W+ + AAL AF
Sbjct: 352 MLPVFLPLVEKLLTSEDWKMKHAALRAF 379
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
protein W05B2.4 protein.
Length = 2265
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/66 (22%), Positives = 34/66 (51%)
Frame = +1
Query: 97 VCEATQSSDMRISVAALQCLVKILSLYYQHMEPYMGQALFPITLEAMKSDIDEISLQGIE 276
V + T+ + +LQ L + S YY+H+ + + ++A ++ ID+ ++Q
Sbjct: 606 VSDVTKMRHFVGEIGSLQSLFEATSGYYKHVNAFFESRRTLVNIDASRNFIDQFTIQLSI 665
Query: 277 FWSNVS 294
F S+++
Sbjct: 666 FESSLT 671
>Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical
protein R107.6 protein.
Length = 1020
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 620 GLGANTLKPLVENAMPTLIEAMYDSSIAVRDTAAW 724
GL A+ L P+V++ P +I++ S AVR TA +
Sbjct: 941 GLQADELSPVVDDLAPCVIKSYDSPSSAVRKTAVY 975
>Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical
protein R06A4.4b protein.
Length = 419
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = +1
Query: 391 QYLAPVLMQKLTKQDDSDDELEWNPSKAASVCLMLLSNCCEDEIVPHVLPFI 546
Q++ P++ + L +S ++ + ++ + L CC +E+ PH+ F+
Sbjct: 273 QFIGPII-EPLIVVINSQQNMQRTLLENTAITIGRLGQCCGEELAPHISRFV 323
>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
protein C26G2.1 protein.
Length = 1270
Score = 27.9 bits (59), Expect = 8.3
Identities = 6/22 (27%), Positives = 17/22 (77%)
Frame = +2
Query: 446 MNWNGIRQRLLLFVLCFCQIAV 511
M W+ ++++L++ +LC C++ +
Sbjct: 482 MKWSQVKKKLVMSLLCLCEVVI 503
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,295,208
Number of Sequences: 27780
Number of extensions: 291468
Number of successful extensions: 681
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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