Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0855
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   4.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 472 PLTDSIPIHHQNHLVLLVFASRQVQGIEVPLLHR 371
           PLTD++PIH   H  L +  +R +  +  P++ R
Sbjct: 532 PLTDTVPIHTWIHPWLPLLRNR-LDTLIYPIIRR 564


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 298 HRSHWTRIQYLVMKSHQYQIS*PQVLWGIEL 206
           HR  W  +Q  V  +  YQ++  ++++G +L
Sbjct: 88  HRIRWESVQKEVTVTGTYQLTETELVFGAKL 118


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 169 SLYYQHMEPYM 201
           SLYY +MEP+M
Sbjct: 275 SLYYVNMEPFM 285


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 388 LQYLAPVLMQKLTKQDDSDDELEWNPSKAASVCLMLLSNCC 510
           + +L  VL   +   + +DD  E NP  A      + S+ C
Sbjct: 301 IDFLFQVLHCNMENTEGADDASERNPRSAVLAAREITSSSC 341


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 705 TAILESYIASIKVGMAFSTNGFRVLAPRPPRIEPKCH*SSFSVSP 571
           TA LES +++  V  A      +  +P P    P+   SS S SP
Sbjct: 36  TASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSP 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,117
Number of Sequences: 438
Number of extensions: 3469
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)