Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0853
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    27   1.8  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.4  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   7.5  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   7.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   9.9  

>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 70  PSAPDLTTLSNTFTKRSTSVISQPIKQYNRP-RMK*SLINPCKLG 201
           PS PD T+ + + T   +S  ++PI+  +RP   K     P KLG
Sbjct: 213 PSRPDSTSTTKSKTSSISSARARPIRASSRPTASKLGASRPQKLG 257


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +1

Query: 295 YASDLYWALISIATGYRGAADFCECTIFL*YVLNIIKNISFHSLLFFLPKLIALRGYFSV 474
           Y   +Y   IS   G  GA      T  +  V+ +     F S   FLP LIA++  F  
Sbjct: 422 YLPLIYVGYISCVAGM-GAMICVNATTSMSKVMGLTTIFMFGSGFLFLPPLIAMQATFPP 480

Query: 475 TLTS 486
            +TS
Sbjct: 481 AMTS 484


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 319 KPNKGQKHILSRYTLNSTKRTSLLRI 242
           +P+ G  H+L ++   +T+  S LRI
Sbjct: 56  QPDAGVSHLLEKFAFKTTEERSALRI 81


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 348 CSRLLRVHNLFIICIKYNKKHIFS 419
           C R++  H   I C +YN K I S
Sbjct: 381 CIRIIHAHQRGIACAQYNGKFIVS 404


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 646 LDERINPINTSPLSFSSDLLSGSCFRSG 563
           LD+ + P+NT    FS D+L     R G
Sbjct: 750 LDDTLYPLNTVDTDFSKDILIPKVARRG 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,602
Number of Sequences: 5004
Number of extensions: 46545
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)