Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0853
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858...    30   1.9  
03_05_0324 - 23121401-23121465,23121507-23122059                       29   4.4  
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342...    29   4.4  

>11_03_0107 +
           10084234-10084348,10084830-10084834,10085351-10085803,
           10086143-10086267,10087282-10087345,10087452-10087508,
           10088475-10088485,10089923-10090802
          Length = 569

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 158 LLYCLIGCEITLVDRFVNVLLRVVRSGAEGNG 63
           + YC++G    L    + V  RV R G +GNG
Sbjct: 472 IFYCILGVSAWLGSLLIQVTNRVTRRGGKGNG 503


>03_05_0324 - 23121401-23121465,23121507-23122059
          Length = 205

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 528 DPNKSSASQNLPPDRKHDPLRRSDE 602
           DPN   A+++ PPD+KH+P R + E
Sbjct: 125 DPN---AAKSCPPDKKHEPTRITSE 146


>03_03_0196 +
           15331604-15331646,15332141-15332260,15334106-15334221,
           15334661-15334749,15334885-15334927,15335567-15335741,
           15335840-15335971,15336046-15336383,15336791-15337129,
           15337293-15337975,15338228-15338807,15339356-15339679,
           15340149-15340262
          Length = 1031

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 516 YANTDPNKSSASQNLPPDRKHDPLRRSDEKLSGDVFMGLIRSSS 647
           Y   +P K  A+ N P   +++PL    + L G V   ++  SS
Sbjct: 190 YEGAEPAKFGAADNCPASSRYNPLIEMQQPLDGIVMDNILYPSS 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,775
Number of Sequences: 37544
Number of extensions: 276749
Number of successful extensions: 469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)