Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0853
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)                   29   2.6  
SB_56826| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_51891| Best HMM Match : Sdh_cyt (HMM E-Value=7.7)                   29   4.5  

>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
          Length = 1624

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -1

Query: 388 HIIKRLCTRRSRLHHDIPLLC*LKPNKGQKHILSRYTLNSTKRTSLLRI*FN 233
           H ++ +CTRR   H D   +  +K +KG++ ++ R  +    R  ++ +  N
Sbjct: 513 HAMRSMCTRRRARHWDRLPIVGVKRDKGRRLVVPRPAIGGRTRQGIVNVNVN 564


>SB_56826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 519 ANTDPNKSSASQNLPPDRKHDPLRRSDEKL 608
           A+T+P K SA QN+P    HD   +S+E+L
Sbjct: 189 ADTEPIKQSAPQNIPAASSHD---KSEEEL 215


>SB_51891| Best HMM Match : Sdh_cyt (HMM E-Value=7.7)
          Length = 155

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 246 LRRLVRFVEFNVYRLRICF*PLLGF 320
           +RR  R +EF+V++LR+ F P++ F
Sbjct: 13  IRRKCRTIEFSVWKLRVSFNPVVTF 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,157,667
Number of Sequences: 59808
Number of extensions: 319984
Number of successful extensions: 694
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)