Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0853
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical ...    30   1.3  
U53341-3|AAM69115.1|  608|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U53341-2|AAC69108.2|  645|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical
           protein C03H5.5 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 227 SKKFIDQSQPSLQG---LIKLHFIRGLLYCLIGCEITLVDRFVNVL 99
           + + +DQ  P +QG   +I++ +  G  Y +IG     VDRF+ VL
Sbjct: 262 TSQILDQMPPEIQGTETMIRVTYQIGFAYLIIGRFAESVDRFLKVL 307


>U53341-3|AAM69115.1|  608|Caenorhabditis elegans Hypothetical
           protein F49E10.4b protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 55  SGFPLPSAPDLTTLSNTFTKRSTS 126
           S  PLP  PD T   N+ TK  TS
Sbjct: 380 SSLPLPDYPDATAYYNSATKEQTS 403


>U53341-2|AAC69108.2|  645|Caenorhabditis elegans Hypothetical
           protein F49E10.4a protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 55  SGFPLPSAPDLTTLSNTFTKRSTS 126
           S  PLP  PD T   N+ TK  TS
Sbjct: 425 SSLPLPDYPDATAYYNSATKEQTS 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,221
Number of Sequences: 27780
Number of extensions: 252674
Number of successful extensions: 533
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)