Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0853
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 551 AESTTGSETRPTEKIRRETQ 610
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 108 YKTVYECNFAAN*TVQQTSNEM 173
           YKT+Y+  ++ N T + T+NE+
Sbjct: 285 YKTLYKQMWSQNITERPTTNEV 306


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 261 ERVF*EYDLIMIKE 220
           +R+F EYD+I I+E
Sbjct: 354 DRIFAEYDIINIQE 367


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 152 YCLIGCEITLVDRF 111
           YCL G  +TL ++F
Sbjct: 604 YCLFGHNVTLANKF 617



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 89  LPLAIHLQNGLR 124
           LPL +H+QN +R
Sbjct: 680 LPLDLHIQNAIR 691


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,824
Number of Sequences: 438
Number of extensions: 3523
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)