Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0853
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33390.1 68415.m04093 expressed protein                             32   0.40 
At5g18000.1 68418.m02111 transcriptional factor B3 family protei...    29   2.1  

>At2g33390.1 68415.m04093 expressed protein 
          Length = 98

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 536 QEQCFAESTTGSETRPTEKIRRETQWGCVYGVDSLVEPFV 655
           + QC      G  +R T+KI+R  QW  + G D+L E  V
Sbjct: 38  ESQCLLPPRKGGMSRSTDKIKRTVQWNDIKG-DNLAEVLV 76


>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 307

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 305 SEAYSQSIYIKFYKTNESSENMI*L*SKKFIDQSQPSLQGLIKLHFIRG 159
           SEA + S+  +F  T + S  +     KKF+D   P+   + K+H+ RG
Sbjct: 206 SEAGTSSLIPEFKLTIKKSHLLFLGIPKKFVDMHMPTETTMFKIHYPRG 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,832,097
Number of Sequences: 28952
Number of extensions: 233156
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)