Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0852
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1113 - 11888691-11888900,11891794-11892243,11892274-118929...    30   2.2  
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748...    30   2.2  
03_05_0957 + 29195549-29196706,29198590-29198868                       28   9.1  

>12_01_1113 -
           11888691-11888900,11891794-11892243,11892274-11892950,
           11893396-11893957,11894121-11894207
          Length = 661

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 153 FFCQQTKLIMNHMTDSSFIIIFRTCFFFKH*LIVKYCL---RSPLIRHAI 13
           F C +     +  +D  F + F+ CF + H    +YCL   RSPL+R  +
Sbjct: 179 FKCSKCLATGHSRSDCHFRVCFKACFAYGH--KARYCLAQIRSPLVRDTL 226


>05_04_0367 -
           20672776-20673550,20674097-20674320,20674626-20674843,
           20675133-20676534
          Length = 872

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 298 VIFCHRSRFFAVLETKDRSSIVKSNQNR 215
           ++ CHR +F A+LETK    I K+   R
Sbjct: 623 ILECHRKQFHAILETKSHVLIPKNGPER 650


>03_05_0957 + 29195549-29196706,29198590-29198868
          Length = 478

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 211 FPDSDLILRLNFDLLSQGQQKTDSGDKK*PLISL 312
           FP++DL+LRL+ D         D+G+   P + L
Sbjct: 40  FPNADLVLRLHLDPCPDDDADLDAGEDHRPSLDL 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,092,337
Number of Sequences: 37544
Number of extensions: 386026
Number of successful extensions: 710
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)