Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0852
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26378| Best HMM Match : Transposase_21 (HMM E-Value=2.2e-06)        29   4.0  
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               29   5.3  

>SB_26378| Best HMM Match : Transposase_21 (HMM E-Value=2.2e-06)
          Length = 854

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +3

Query: 588 ISISRWVAHLRCRCLWAPVSA*HQGGCELVHPSKQQKRPIVKFHSYV 728
           +S ++ +  LR +CL AP S       +L+HP+K Q+R  +  H+YV
Sbjct: 652 VSFTQKLPELREKCL-APGSDEDTLYWKLMHPNKTQRREEILKHTYV 697


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +1

Query: 73  KKTCPENNNKARIGHM-VHNQFGLLTKKKYHFKRSHISRRCLSVTTGFPDSDLILRLNFD 249
           KK    N N+  +G   +HN+  ++ K +Y+F++        SVTTG      +LR+  +
Sbjct: 168 KKENERNQNQMDMGDSNIHNK--IVEKNRYNFEKK-------SVTTGNKVESSLLRVGNN 218

Query: 250 LLSQGQQKTDSGDKK*PLISL 312
              Q  Q   S D    LIS+
Sbjct: 219 SQKQRHQTVSSDDTPGDLISI 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,524,312
Number of Sequences: 59808
Number of extensions: 466878
Number of successful extensions: 841
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)