Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0851
(583 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 106 2e-23
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 99 5e-21
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 99 5e-21
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 93 3e-19
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 93 3e-19
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 87 1e-17
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 87 1e-17
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 87 1e-17
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 81 8e-16
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 69 4e-12
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 69 4e-12
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 69 4e-12
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 69 5e-12
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 61 1e-09
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 58 9e-09
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 58 9e-09
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 58 9e-09
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 58 9e-09
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 58 9e-09
U14102-1|AAC46495.1| 299|Drosophila melanogaster putative rever... 52 4e-07
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 52 4e-07
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 48 7e-06
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 33 0.21
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 31 1.5
DQ503470-1|ABF54966.1| 353|Drosophila melanogaster OLF186-F pro... 30 2.0
AY071273-1|AAL48895.1| 351|Drosophila melanogaster RE30427p pro... 30 2.0
AF188634-1|AAF01457.1| 351|Drosophila melanogaster F protein pr... 30 2.0
AE013599-2579|AAM68473.1| 351|Drosophila melanogaster CG11430-P... 30 2.0
AE013599-2578|AAF57780.2| 351|Drosophila melanogaster CG11430-P... 30 2.0
BT011179-1|AAR88540.1| 1125|Drosophila melanogaster RE71243p pro... 29 3.5
BT010001-1|AAQ22470.1| 1088|Drosophila melanogaster RE31064p pro... 29 3.5
AE014297-3297|AAF56113.2| 1088|Drosophila melanogaster CG4467-PA... 29 3.5
AE014297-3296|ABI31198.1| 1125|Drosophila melanogaster CG4467-PB... 29 3.5
DQ989012-1|ABK97613.1| 512|Drosophila melanogaster gustatory re... 29 6.1
BT010264-1|AAQ23582.1| 1238|Drosophila melanogaster RE27764p pro... 29 6.1
AY094943-1|AAM11296.1| 469|Drosophila melanogaster RH56938p pro... 29 6.1
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 29 6.1
AE014296-3371|AAF51605.2| 1535|Drosophila melanogaster CG5195-PA... 29 6.1
AE014296-3283|AAF49064.2| 1029|Drosophila melanogaster CG7323-PA... 29 6.1
AE014296-707|AAF47803.1| 512|Drosophila melanogaster CG14979-PA... 29 6.1
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 106 bits (254), Expect = 2e-23
Identities = 59/174 (33%), Positives = 90/174 (51%)
Frame = +1
Query: 61 PITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRN 240
P+ + P+P + KYLGV LDR +TF H+ +R R + + Y +L SRSKLSL N
Sbjct: 731 PVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSN 790
Query: 241 KVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRIAVGAPWFLRNVXXXXXXXX 420
K+T+YK + P Y ++ A +++K +Q IQ++ R+ G WF+RN
Sbjct: 791 KLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKL 850
Query: 421 XXXXKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITGS 582
+ S R+ ++ RH N L A P R +N RR+P+ +IT S
Sbjct: 851 ATVFDEINKHSSRYHDRLERHRNRLASALNRSRP---PRRLN-RRQPRDLITRS 900
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 98.7 bits (235), Expect = 5e-21
Identities = 52/151 (34%), Positives = 77/151 (50%)
Frame = +1
Query: 43 NTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRS 222
N P+ L IP +V YLGV LDR +T+R HI+ L+ ++ +RS
Sbjct: 716 NKQTCPPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARS 775
Query: 223 KLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRIAVGAPWFLRNVXX 402
LSL K LY + ++P+ TY S ++ +A+R+N+ +Q QSR RI GAPW+LRN
Sbjct: 776 PLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENI 835
Query: 403 XXXXXXXXXXKYLQSASLRHFEKAARHENPL 495
+ + ++ EK H NPL
Sbjct: 836 HRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 98.7 bits (235), Expect = 5e-21
Identities = 52/151 (34%), Positives = 77/151 (50%)
Frame = +1
Query: 43 NTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRS 222
N P+ L IP +V YLGV LDR +T+R HI+ L+ ++ +RS
Sbjct: 716 NKQTCPPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARS 775
Query: 223 KLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRIAVGAPWFLRNVXX 402
LSL K LY + ++P+ TY S ++ +A+R+N+ +Q QSR RI GAPW+LRN
Sbjct: 776 PLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENI 835
Query: 403 XXXXXXXXXXKYLQSASLRHFEKAARHENPL 495
+ + ++ EK H NPL
Sbjct: 836 HRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 92.7 bits (220), Expect = 3e-19
Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
Frame = +1
Query: 1 PNITSSIPLRSRRANTSAVS-PITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRA 177
PN T++I RR + + PI WV ++YLG+ D+ +TF+ HI +
Sbjct: 735 PNKTNAIFFTKRRKPRYLPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKV 794
Query: 178 AFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFC 357
I+ LYP++ +SKLS+ NK+ ++KT P++ Y S V+ A+T++K LQ+ Q++
Sbjct: 795 NKIICTLYPLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLL 854
Query: 358 RIAVGAPWF 384
++ + P++
Sbjct: 855 KLIMNLPYY 863
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 92.7 bits (220), Expect = 3e-19
Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
Frame = +1
Query: 1 PNITSSIPLRSRRANTSAVS-PITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRA 177
PN T++I RR + + PI WV ++YLG+ D+ +TF+ HI +
Sbjct: 683 PNKTNAIFFTKRRKPRYLPDRQLRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKV 742
Query: 178 AFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFC 357
I+ LYP++ +SKLS+ NK+ ++KT P++ Y S V+ A+T++K LQ+ Q++
Sbjct: 743 NKIICTLYPLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLL 802
Query: 358 RIAVGAPWF 384
++ + P++
Sbjct: 803 KLIMNLPYY 811
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 87.4 bits (207), Expect = 1e-17
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 4/177 (2%)
Frame = +1
Query: 40 ANTSAVSP-ITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCS 216
AN + P ++L G+ I KYLG+TLDR +TF HI ++ + R+ ++
Sbjct: 728 ANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAP 787
Query: 217 RSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRIAVGAPWFLRNV 396
R+KLSL KV +YK+ + P + Y V+ AA+++L ++++Q++ R GAPW++R
Sbjct: 788 RNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTR 847
Query: 397 XXXXXXXXXXXXKYLQSASLRHFEKAARHENPLIVAAGNYI---PDPVDRMVNRRRR 558
LQ+ + ++ E+ H N L G DP R+ R +R
Sbjct: 848 DIERDLKVPKLGDKLQNIAQKYMERLNVHPNSLARKLGTAAVVNADPRTRVKRRLKR 904
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 87.4 bits (207), Expect = 1e-17
Identities = 42/117 (35%), Positives = 69/117 (58%)
Frame = +1
Query: 43 NTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRS 222
N P+ L P+P +V YLGV LDR +T+R HI+ + + L+ ++ S S
Sbjct: 718 NRQDCPPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLKLKANNLHWLINSGS 777
Query: 223 KLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRIAVGAPWFLRN 393
LSL +KV LY + ++P+ TY S ++ +A+ +N+ +Q QS+ R GAPW++R+
Sbjct: 778 PLSLDHKVLLYNSILKPIWTYGSQLWGNASNSNIDIIQRAQSKILRTITGAPWYVRS 834
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p protein.
Length = 718
Score = 87.4 bits (207), Expect = 1e-17
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 4/177 (2%)
Frame = +1
Query: 40 ANTSAVSP-ITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCS 216
AN + P ++L G+ I KYLG+TLDR +TF HI ++ + R+ ++
Sbjct: 530 ANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAP 589
Query: 217 RSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRIAVGAPWFLRNV 396
R+KLSL KV +YK+ + P + Y V+ AA+++L ++++Q++ R GAPW++R
Sbjct: 590 RNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTR 649
Query: 397 XXXXXXXXXXXXKYLQSASLRHFEKAARHENPLIVAAGNYI---PDPVDRMVNRRRR 558
LQ+ + ++ E+ H N L G DP R+ R +R
Sbjct: 650 DIERDLKVPKLGDKLQNIAQKYLERLNVHPNSLARKLGTAAVVNADPRTRVKRRLKR 706
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 81.4 bits (192), Expect = 8e-16
Identities = 43/158 (27%), Positives = 79/158 (50%)
Frame = +1
Query: 22 PLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLY 201
P + + + +PI L G + S+ KYLG+TLD+ +TF PH+K R + +L
Sbjct: 724 PCFTLKTLSPVTAPIELEGVILDQPSQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLR 783
Query: 202 PMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRIAVGAPW 381
+L +S ++LR K +Y C+ P+ Y ++ AA++N +QV+Q+R R P+
Sbjct: 784 WLLNRKSTMTLRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPY 843
Query: 382 FLRNVXXXXXXXXXXXXKYLQSASLRHFEKAARHENPL 495
++R + + + R+ ++ RH + L
Sbjct: 844 YVRGTTLHRDLNLHTVEEQISRHTSRYSDRLRRHHSIL 881
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 69.3 bits (162), Expect = 4e-12
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 3/183 (1%)
Frame = +1
Query: 10 TSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFIL 189
T I ++ T+ +P + GQ ++K +YLG+ LDR +TF H+ ++ +
Sbjct: 777 TGHILFSLKKEQTNIYTPPLINGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAY 836
Query: 190 GRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIA 366
+L ++ S L K+ L+K + P+ YA ++ + T K +Q +++++ R
Sbjct: 837 KKLEWLIGKNSHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRI 896
Query: 367 VGAPWFLRNVXXXXXXXXXXXXKYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRM 540
+ A + R + AS R+ HENPLI + Y P+ ++
Sbjct: 897 INASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKPNRLELS 956
Query: 541 VNR 549
NR
Sbjct: 957 KNR 959
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 69.3 bits (162), Expect = 4e-12
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 3/183 (1%)
Frame = +1
Query: 10 TSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFIL 189
T I ++ T+ +P + GQ ++K +YLG+ LDR +TF H+ ++ +
Sbjct: 777 TGHILFSLKKEQTNIYTPPLINGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAY 836
Query: 190 GRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIA 366
+L ++ S L K+ L+K + P+ YA ++ + T K +Q +++++ R
Sbjct: 837 KKLEWLIGKNSHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRI 896
Query: 367 VGAPWFLRNVXXXXXXXXXXXXKYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRM 540
+ A + R + AS R+ HENPLI + Y P+ ++
Sbjct: 897 INASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKPNRLELS 956
Query: 541 VNR 549
NR
Sbjct: 957 KNR 959
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 69.3 bits (162), Expect = 4e-12
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 3/183 (1%)
Frame = +1
Query: 10 TSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFIL 189
T I ++ T+ +P + GQ ++K +YLG+ LDR +TF H+ ++ +
Sbjct: 777 TGHILFSLKKEQTNIYTPPLINGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAY 836
Query: 190 GRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIA 366
+L ++ S L K+ L+K + P+ YA ++ + T K +Q +++++ R
Sbjct: 837 KKLEWLIGKNSHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRI 896
Query: 367 VGAPWFLRNVXXXXXXXXXXXXKYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRM 540
+ A + R + AS R+ HENPLI + Y P+ ++
Sbjct: 897 INASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKPNRLELS 956
Query: 541 VNR 549
NR
Sbjct: 957 KNR 959
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 68.9 bits (161), Expect = 5e-12
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 3/183 (1%)
Frame = +1
Query: 10 TSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFIL 189
T I ++ T+ +P + GQ ++K +YLG+ LDR +TF H+ ++ +
Sbjct: 330 TGHILFSLKKEQTNIYTPPLINGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAY 389
Query: 190 GRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIA 366
+L ++ S L K+ L+K + P+ YA ++ + T K +Q +++++ R
Sbjct: 390 KKLEWLIGKNSHLPKNAKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRI 449
Query: 367 VGAPWFLRNVXXXXXXXXXXXXKYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRM 540
+ A + R + AS R+ HENPLI + Y P+ ++
Sbjct: 450 INASRYTRQADIRTKYNIKSFDETFDKASQRYANSLTDHENPLIYDLLINAYKPNRLELS 509
Query: 541 VNR 549
NR
Sbjct: 510 KNR 512
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 60.9 bits (141), Expect = 1e-09
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 3/165 (1%)
Frame = +1
Query: 64 ITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNK 243
+ + GQ I SK YLGVTLD +T H+ + + + +L +L RSKL + K
Sbjct: 796 VKIKGQTIKKESKQSYLGVTLDSKLTLSSHVTKLLGKYSTAYRKLTWILNGRSKLPTKTK 855
Query: 244 VTLYKTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIAVGAPWFLRNVXXXXXXXX 420
+ + K+ + P+ YA + ++ +QV ++R R A + RN
Sbjct: 856 ILILKSVLSPIWQYAIAAWGPLVTDAQIRRVQVEENRKIRDICRAGRYTRNQTIRDLFGV 915
Query: 421 XXXXKYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRMVNR 549
++ Q A R E H N + + + +YIP+ ++R R
Sbjct: 916 KTVEEFYQQAMHRFSETIKSHPNIAVRRILSRHYIPNRLERSRQR 960
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial cds.
).
Length = 964
Score = 58.0 bits (134), Expect = 9e-09
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Frame = +1
Query: 76 GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 255
GQ I SK YLGV LD +T PH+ V + ++ +L RSKL K+ +
Sbjct: 672 GQAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLIL 731
Query: 256 KTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIAVGAPWFLRNVXXXXXXXXXXXX 432
K+ + P+ YA + ++ +QV ++R R A + +N
Sbjct: 732 KSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVE 791
Query: 433 KYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRMVNR 549
++ Q A R E H N + + + +YIP+ ++R R
Sbjct: 792 EFYQQAVHRFSETTKSHPNVAVRRIFSRHYIPNRLERSRQR 832
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 58.0 bits (134), Expect = 9e-09
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Frame = +1
Query: 76 GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 255
GQ I SK YLGV LD +T PH+ V + ++ +L RSKL K+ +
Sbjct: 788 GQAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLIL 847
Query: 256 KTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIAVGAPWFLRNVXXXXXXXXXXXX 432
K+ + P+ YA + ++ +QV ++R R A + +N
Sbjct: 848 KSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVE 907
Query: 433 KYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRMVNR 549
++ Q A R E H N + + + +YIP+ ++R R
Sbjct: 908 EFYQQAVHRFSETTKSHPNVAVRRIFSRHYIPNRLERSRQR 948
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 58.0 bits (134), Expect = 9e-09
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Frame = +1
Query: 76 GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 255
GQ I SK YLGV LD +T PH+ V + ++ +L RSKL K+ +
Sbjct: 788 GQAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLIL 847
Query: 256 KTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIAVGAPWFLRNVXXXXXXXXXXXX 432
K+ + P+ YA + ++ +QV ++R R A + +N
Sbjct: 848 KSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVE 907
Query: 433 KYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRMVNR 549
++ Q A R E H N + + + +YIP+ ++R R
Sbjct: 908 EFYQQAVHRFSETTKSHPNVAVRRIFSRHYIPNRLERSRQR 948
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 58.0 bits (134), Expect = 9e-09
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Frame = +1
Query: 76 GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 255
GQ I SK YLGV LD +T PH+ V + ++ +L RSKL K+ +
Sbjct: 750 GQAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLIL 809
Query: 256 KTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIAVGAPWFLRNVXXXXXXXXXXXX 432
K+ + P+ YA + ++ +QV ++R R A + +N
Sbjct: 810 KSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVE 869
Query: 433 KYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRMVNR 549
++ Q A R E H N + + + +YIP+ ++R R
Sbjct: 870 EFYQQAVHRFSETTKSHPNVAVRRIFSRHYIPNRLERSRQR 910
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 58.0 bits (134), Expect = 9e-09
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Frame = +1
Query: 76 GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 255
GQ I SK YLGV LD +T PH+ V + ++ +L RSKL K+ +
Sbjct: 788 GQAIKKESKQSYLGVILDSKLTLSPHVTKVVGKYLTAYRKMSWILNERSKLPTNTKMLIL 847
Query: 256 KTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIAVGAPWFLRNVXXXXXXXXXXXX 432
K+ + P+ YA + ++ +QV ++R R A + +N
Sbjct: 848 KSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTKNQTIRDRYCVKTVE 907
Query: 433 KYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRMVNR 549
++ Q A R E H N + + + +YIP+ ++R R
Sbjct: 908 EFYQQAVHRFSETTKSHPNVAVRRIFSRHYIPNRLERSRQR 948
>U14102-1|AAC46495.1| 299|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 299
Score = 52.4 bits (120), Expect = 4e-07
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 3/161 (1%)
Frame = +1
Query: 76 GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 255
GQ I SK YLGV LD +T H+ + + ++ +L RSKL + K+ +
Sbjct: 3 GQVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLIL 62
Query: 256 KTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIAVGAPWFLRNVXXXXXXXXXXXX 432
K+ + P+ YA + ++ +QV ++R R A + N
Sbjct: 63 KSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTSNQTIRDRYGIKTVE 122
Query: 433 KYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRMVNR 549
++ Q A R E H N + + +YIP+ ++R R
Sbjct: 123 EFYQQALHRFSETIKSHPNIAVRRIFTRHYIPNRLERSRQR 163
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 52.4 bits (120), Expect = 4e-07
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 3/161 (1%)
Frame = +1
Query: 76 GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 255
GQ I SK YLGV LD +T H+ + + ++ +L RSKL + K+ +
Sbjct: 788 GQVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLIL 847
Query: 256 KTCIRPVMTYASVVFAH-AARTNLKSLQVIQSRFCRIAVGAPWFLRNVXXXXXXXXXXXX 432
K+ + P+ YA + ++ +QV ++R R A + N
Sbjct: 848 KSVLSPIWQYAIAAWGPLVTDAQIRRIQVEENRKMRDICRAGRYTSNQTIRDRYGIKTVE 907
Query: 433 KYLQSASLRHFEKAARHENPLI--VAAGNYIPDPVDRMVNR 549
++ Q A R E H N + + +YIP+ ++R R
Sbjct: 908 EFYQQALHRFSETIKSHPNIAVRRIFTRHYIPNRLERSRQR 948
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 48.4 bits (110), Expect = 7e-06
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = +1
Query: 76 GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 255
G+ +P+V +YLG+T+ GM F HI ++R R ++G L +L + S R + T+Y
Sbjct: 725 GRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIY 784
Query: 256 KTCIRPVMTYASVVFAHAA 312
+ P + + + V+ A
Sbjct: 785 DGLMAPCVLFGAPVWYDTA 803
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/97 (21%), Positives = 44/97 (45%)
Frame = +1
Query: 85 IPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTC 264
IP V+ +K LG+TL+ + HI + + L + + + + + + K
Sbjct: 731 IPSVTSLKILGITLNNKYKWNTHINLLLPKLHNKLNIIKCLSSLKFNCNTHTLLNVAKAT 790
Query: 265 IRPVMTYASVVFAHAARTNLKSLQVIQSRFCRIAVGA 375
I + Y ++ HA ++ L ++ + R+A+GA
Sbjct: 791 IIAKLEYGLFLYGHAPKSILNKIKTPFNSAIRLALGA 827
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 13 SSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILG 192
+ + L S R + + + + G I +KYLGV +DR ++F+ H + +AA
Sbjct: 688 TEVVLLSSRKSVECMR-VEVKGVEIASAETLKYLGVLIDRRLSFKAHARYASKKAAMTAA 746
Query: 193 RL 198
L
Sbjct: 747 AL 748
>DQ503470-1|ABF54966.1| 353|Drosophila melanogaster OLF186-F
protein.
Length = 353
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 120 HPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL*SKQTVPPQ*GNSLQNLYTPR-HDVCKRS 296
HP+ + P+ + + + RT++SN+L PP S QN PR H S
Sbjct: 77 HPQHHSNSPTGSGSNSNNSAGFQRTSISNSLLQFPPPPPP---SSQNQAKPRGHHRTASS 133
Query: 297 VRSRSPHQLEIPSGYSITILQDSR 368
S+S L P+ S LQ SR
Sbjct: 134 SMSQSGEDLHSPTYLSWRKLQLSR 157
>AY071273-1|AAL48895.1| 351|Drosophila melanogaster RE30427p
protein.
Length = 351
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 120 HPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL*SKQTVPPQ*GNSLQNLYTPR-HDVCKRS 296
HP+ + P+ + + + RT++SN+L PP S QN PR H S
Sbjct: 75 HPQHHSNSPTGSGSNSNNSAGFQRTSISNSLLQFPPPPPP---SSQNQAKPRGHHRTASS 131
Query: 297 VRSRSPHQLEIPSGYSITILQDSR 368
S+S L P+ S LQ SR
Sbjct: 132 SMSQSGEDLHSPTYLSWRKLQLSR 155
>AF188634-1|AAF01457.1| 351|Drosophila melanogaster F protein
protein.
Length = 351
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 120 HPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL*SKQTVPPQ*GNSLQNLYTPR-HDVCKRS 296
HP+ + P+ + + + RT++SN+L PP S QN PR H S
Sbjct: 75 HPQHHSNSPTGSGSNSNNSAGFQRTSISNSLLQFPPPPPP---SSQNQAKPRGHHRTASS 131
Query: 297 VRSRSPHQLEIPSGYSITILQDSR 368
S+S L P+ S LQ SR
Sbjct: 132 SMSQSGEDLHSPTYLSWRKLQLSR 155
>AE013599-2579|AAM68473.1| 351|Drosophila melanogaster CG11430-PB,
isoform B protein.
Length = 351
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 120 HPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL*SKQTVPPQ*GNSLQNLYTPR-HDVCKRS 296
HP+ + P+ + + + RT++SN+L PP S QN PR H S
Sbjct: 75 HPQHHSNSPTGSGSNSNNSAGFQRTSISNSLLQFPPPPPP---SSQNQAKPRGHHRTASS 131
Query: 297 VRSRSPHQLEIPSGYSITILQDSR 368
S+S L P+ S LQ SR
Sbjct: 132 SMSQSGEDLHSPTYLSWRKLQLSR 155
>AE013599-2578|AAF57780.2| 351|Drosophila melanogaster CG11430-PA,
isoform A protein.
Length = 351
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 120 HPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL*SKQTVPPQ*GNSLQNLYTPR-HDVCKRS 296
HP+ + P+ + + + RT++SN+L PP S QN PR H S
Sbjct: 75 HPQHHSNSPTGSGSNSNNSAGFQRTSISNSLLQFPPPPPP---SSQNQAKPRGHHRTASS 131
Query: 297 VRSRSPHQLEIPSGYSITILQDSR 368
S+S L P+ S LQ SR
Sbjct: 132 SMSQSGEDLHSPTYLSWRKLQLSR 155
>BT011179-1|AAR88540.1| 1125|Drosophila melanogaster RE71243p
protein.
Length = 1125
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 43 NTSAVSPITLFGQPIPWVSKVKYLGVTLDRGM-TFRPHIKTV 165
NT +PI G+P PW+ K+ V R M T P++ T+
Sbjct: 117 NTQPFNPIATNGEPFPWLEKMLPTSVRPLRYMVTIHPNLTTL 158
>BT010001-1|AAQ22470.1| 1088|Drosophila melanogaster RE31064p
protein.
Length = 1088
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 43 NTSAVSPITLFGQPIPWVSKVKYLGVTLDRGM-TFRPHIKTV 165
NT +PI G+P PW+ K+ V R M T P++ T+
Sbjct: 80 NTQPFNPIATNGEPFPWLEKMLPTSVRPLRYMVTIHPNLTTL 121
>AE014297-3297|AAF56113.2| 1088|Drosophila melanogaster CG4467-PA,
isoform A protein.
Length = 1088
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 43 NTSAVSPITLFGQPIPWVSKVKYLGVTLDRGM-TFRPHIKTV 165
NT +PI G+P PW+ K+ V R M T P++ T+
Sbjct: 80 NTQPFNPIATNGEPFPWLEKMLPTSVRPLRYMVTIHPNLTTL 121
>AE014297-3296|ABI31198.1| 1125|Drosophila melanogaster CG4467-PB,
isoform B protein.
Length = 1125
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 43 NTSAVSPITLFGQPIPWVSKVKYLGVTLDRGM-TFRPHIKTV 165
NT +PI G+P PW+ K+ V R M T P++ T+
Sbjct: 117 NTQPFNPIATNGEPFPWLEKMLPTSVRPLRYMVTIHPNLTTL 158
>DQ989012-1|ABK97613.1| 512|Drosophila melanogaster gustatory
receptor 63a protein.
Length = 512
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +1
Query: 196 LYPMLCSRS-KLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRI--- 363
LY + S L LR K +Y + P+++ SVV H ++L QV+ +C +
Sbjct: 206 LYYQISGHSLPLKLRQKA-VYIAIVLPILSVLSVVITHVTMSDLNINQVVP--YCILDNL 262
Query: 364 --AVGAPWFL 387
+GA WFL
Sbjct: 263 TAMLGAWWFL 272
>BT010264-1|AAQ23582.1| 1238|Drosophila melanogaster RE27764p protein.
Length = 1238
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 31 SRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRG 135
+R+ + SP T FG P+P VS ++ G DRG
Sbjct: 1068 NRKPQPGSGSPFTFFGYPLPSVSLGRFFGFG-DRG 1101
>AY094943-1|AAM11296.1| 469|Drosophila melanogaster RH56938p
protein.
Length = 469
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 31 SRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIK 159
S+ ANT +V P+ GQ +P ++ V L RGM F K
Sbjct: 336 SKSANTLSVQPMNHLGQSLPNLNMHHSHTVPLRRGMAFSTSTK 378
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 1 PNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRA 177
P T ++ + SR+A +A + + G + +KYL V +D ++FR H+ +A
Sbjct: 123 PEKTKAVLISSRKAVETAT--VEVGGTLVSSSRAIKYLEVMIDTRLSFREHLAYASSKA 179
>AE014296-3371|AAF51605.2| 1535|Drosophila melanogaster CG5195-PA
protein.
Length = 1535
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 31 SRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRG 135
+R+ + SP T FG P+P VS ++ G DRG
Sbjct: 1068 NRKPQPGSGSPFTFFGYPLPSVSLGRFFGFG-DRG 1101
>AE014296-3283|AAF49064.2| 1029|Drosophila melanogaster CG7323-PA
protein.
Length = 1029
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 31 SRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIK 159
S+ ANT +V P+ GQ +P ++ V L RGM F K
Sbjct: 896 SKSANTLSVQPMNHLGQSLPNLNMHHSHTVPLRRGMAFSTSTK 938
>AE014296-707|AAF47803.1| 512|Drosophila melanogaster CG14979-PA
protein.
Length = 512
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +1
Query: 196 LYPMLCSRS-KLSLRNKVTLYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCRI--- 363
LY + S L LR K +Y + P+++ SVV H ++L QV+ +C +
Sbjct: 206 LYYQISGHSLPLKLRQKA-VYIAIVLPILSVLSVVITHVTMSDLNINQVVP--YCILDNL 262
Query: 364 --AVGAPWFL 387
+GA WFL
Sbjct: 263 TAMLGAWWFL 272
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,268,673
Number of Sequences: 53049
Number of extensions: 586592
Number of successful extensions: 1463
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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