Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0851
(583 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 44 1e-04
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 40 0.001
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 36 0.016
AL137227-6|CAB70236.2| 159|Caenorhabditis elegans Hypothetical ... 28 5.6
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 27 9.7
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 27 9.7
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 27 9.7
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/97 (27%), Positives = 49/97 (50%)
Frame = +1
Query: 70 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 249
L G PI + + LG + + F H K + A F L ++ + +K + +
Sbjct: 136 LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---IL 192
Query: 250 LYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCR 360
LYKT IRP + Y +VV + +++ K+++ +Q+ F R
Sbjct: 193 LYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/97 (26%), Positives = 49/97 (50%)
Frame = +1
Query: 70 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 249
L G PI + + LG + + F H + + A F L ++ + +K + +
Sbjct: 166 LDGYPIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---IL 222
Query: 250 LYKTCIRPVMTYASVVFAHAARTNLKSLQVIQSRFCR 360
LYKT IRP + Y +VV + +++ K+++ +Q+ F R
Sbjct: 223 LYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/84 (30%), Positives = 42/84 (50%)
Frame = +1
Query: 82 PIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKT 261
PI + + LG+ D +TF+PHIK + + L R +L S L L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244
Query: 262 CIRPVMTYASVVFAHAARTNLKSL 333
I P++ Y S V++ ++L +L
Sbjct: 245 YILPLIEYGSAVYSPKPSSSLSTL 268
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 36.3 bits (80), Expect = 0.016
Identities = 31/101 (30%), Positives = 48/101 (47%)
Frame = +1
Query: 1 PNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAA 180
P ++ + L +R N S ++ G PI S V+ LG+ D + F HI V +
Sbjct: 946 PTKSALLALGTRNKNQS----YSVDGVPITPSSTVRDLGLITDCKLKFEHHIVKV---SC 998
Query: 181 FILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFA 303
+ R +L + S S + LYKT + P+M Y S V+A
Sbjct: 999 LAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVYA 1039
>AL137227-6|CAB70236.2| 159|Caenorhabditis elegans Hypothetical
protein F58D5.5 protein.
Length = 159
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +3
Query: 216 SKQTVPPQ*GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYSITILQDSRRSALVP*E 392
S QT P GN Q PRH +R +S SP L + S+ +R L P E
Sbjct: 26 SHQTTPKSSGNPRQQQAQPRHR--QRKAQSSSPASLAAFASSSVCSSPSARNVPLPPVE 82
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +1
Query: 22 PLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHI 156
PL + T V P+T QP P+ + G+ M H+
Sbjct: 653 PLMKQEIKTETVEPVTSIAQPFPFNPMMGNHGLNFANHMLLNKHL 697
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +1
Query: 22 PLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHI 156
PL + T V P+T QP P+ + G+ M H+
Sbjct: 675 PLMKQEIKTETVEPVTSIAQPFPFNPMMGNHGLNFANHMLLNKHL 719
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +1
Query: 22 PLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHI 156
PL + T V P+T QP P+ + G+ M H+
Sbjct: 675 PLMKQEIKTETVEPVTSIAQPFPFNPMMGNHGLNFANHMLLNKHL 719
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,439,917
Number of Sequences: 27780
Number of extensions: 280489
Number of successful extensions: 558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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