Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0851
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   3.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   6.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 582 GSGNDVLWATSTVYHSVYWVGYVISSGYDERVLMSC 475
           G  +  +W    V+ +V W+G+ I+SG +  V+ +C
Sbjct: 359 GFCSQCIWQEKIVFAAVTWLGW-INSGMNP-VIYAC 392


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 31  SRRANTSAVSPITLFGQPIPWV 96
           ++ A T  +SP  L    IPWV
Sbjct: 69  AKGAFTGEISPAMLLDNGIPWV 90


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 522 GYVISSGYDERVLMSCRLLKMAQRC 448
           GY  +S +D +V+ + ++LKM   C
Sbjct: 210 GYTNNSKWDFKVIKATKVLKMYACC 234


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 516 VISSGYDERVLMSCRLLKMAQRCRL*ILTKRVELQVVVEIHIPKEPRR 373
           ++ +G   R+L   +LL + +  RL  L + V     V I + ++P R
Sbjct: 198 ILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQQPER 245


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 540 GKPSTSPKARH 572
           GKP+ SP +RH
Sbjct: 744 GKPTISPDSRH 754


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,935
Number of Sequences: 438
Number of extensions: 3325
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)