Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0851
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31990.1 68414.m03934 expressed protein                             31   0.74 
At5g47380.1 68418.m05839 expressed protein contains Pfam profile...    28   4.0  
At4g19960.1 68417.m02923 potassium transporter family protein si...    28   5.2  
At2g25605.1 68415.m03067 expressed protein                             28   5.2  
At2g24010.1 68415.m02868 serine carboxypeptidase S10 family prot...    27   9.1  
At2g18876.2 68415.m02202 expressed protein                             27   9.1  
At2g18876.1 68415.m02201 expressed protein                             27   9.1  

>At1g31990.1 68414.m03934 expressed protein
          Length = 325

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 99  EGQISRRHPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL 212
           +  + + HP + D +P  Y+N  +  R+ + TTLS+ +
Sbjct: 48  QSHVGKAHPLKMDQMPRRYRNRRKTLRLATNTTLSSII 85


>At5g47380.1 68418.m05839 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 618

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/91 (26%), Positives = 36/91 (39%)
 Frame = +3

Query: 63  HHSLWPAHSVGLEGQISRRHPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL*SKQTVPPQ* 242
           HH L    S+  E  +SR    Q   I SP  +  +P R      +SNA  S    P + 
Sbjct: 154 HHVLSLYRSI-FEQTVSRAPSEQSSSISSPAHHIKQPPRKQDPNVISNAFCSSNNFPLKP 212

Query: 243 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPS 335
            +++  L        K+   S+   +  IPS
Sbjct: 213 WHAMVTLKDSSRKTSKKDQSSQFQFRNCIPS 243


>At4g19960.1 68417.m02923 potassium transporter family protein
           similar to potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 842

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = -2

Query: 282 RHDGAYTSFVESYLIAEGQFASTTKHWIESS*NKRGAVAYRFYMGTECHPSVEGDA*IFD 103
           R D   T++  + + AEG FA+ TK W+E    ++ A+     +GT C   + GD  +  
Sbjct: 149 RSDEDLTTYSRT-VSAEGSFAAKTKKWLEGKEWRKRALLVVVLLGT-C--MMIGDGILTP 204

Query: 102 LRDPRNGLAKESDGTNGGGV 43
                 G+   +   +GG +
Sbjct: 205 AISATGGIKVNNPKMSGGNI 224


>At2g25605.1 68415.m03067 expressed protein
          Length = 200

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 445 SASLRHFEKAARHENPLIVAAGNYIPD--PVDRMVNRRRRP 561
           SA+++HF    R    L+ A+ + +PD    D + +RR+RP
Sbjct: 16  SANVKHFNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRP 56


>At2g24010.1 68415.m02868 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
          Length = 425

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 339 NLKGFQVGAGCVSEHYACIRHDGAYTSFVESYLIAEGQFASTTKH 205
           NLKGF VG G + +HY  +   GA        +I++  + S  KH
Sbjct: 176 NLKGFMVGNGDMDKHYDRL---GAAMYAWSHAMISDKTYKSILKH 217


>At2g18876.2 68415.m02202 expressed protein
          Length = 284

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 420 ELQVVVEIHIPKEPRRSDGYPAES*LNNLKG 328
           E + ++  H+PK  RR +  P  S +N L+G
Sbjct: 254 EQESIMSKHLPKTDRRRNSAPPHSSVNGLRG 284


>At2g18876.1 68415.m02201 expressed protein
          Length = 382

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 420 ELQVVVEIHIPKEPRRSDGYPAES*LNNLKG 328
           E + ++  H+PK  RR +  P  S +N L+G
Sbjct: 352 EQESIMSKHLPKTDRRRNSAPPHSSVNGLRG 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,357
Number of Sequences: 28952
Number of extensions: 263283
Number of successful extensions: 637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)