Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0850
(584 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 321 3e-88
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 153 8e-38
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.056
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 33 0.13
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 31 0.52
SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6) 30 1.2
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.1
SB_2156| Best HMM Match : DUF1378 (HMM E-Value=6.3) 29 2.8
SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1) 29 3.7
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_22221| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 321 bits (788), Expect = 3e-88
Identities = 155/194 (79%), Positives = 168/194 (86%)
Frame = +1
Query: 1 VAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVV 180
V+QKYR E+LYEGP DD A+GIK+CDPE MVPTSDKGRFYAFGRVFSGKV
Sbjct: 346 VSQKYRCELLYEGPQDDAVALGIKACDPE---------MVPTSDKGRFYAFGRVFSGKVA 396
Query: 181 TGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKT 360
+GQK RIMGP++ PGKKEDLY KTIQRTILMMGRY+E I DVP GNI GLVGVDQFLVKT
Sbjct: 397 SGQKVRIMGPHYVPGKKEDLYLKTIQRTILMMGRYIEPIVDVPCGNIVGLVGVDQFLVKT 456
Query: 361 GTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESG 540
GTI+T+++ HNMK+MKFSVSPVVRVAVEPKNPADLPKLVEGL RLAKSDPMVQ EESG
Sbjct: 457 GTISTYEHCHNMKMMKFSVSPVVRVAVEPKNPADLPKLVEGLNRLAKSDPMVQSFTEESG 516
Query: 541 EHIVAGAGELHLEI 582
EHIVAGAGELHLEI
Sbjct: 517 EHIVAGAGELHLEI 530
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 153 bits (372), Expect = 8e-38
Identities = 74/191 (38%), Positives = 118/191 (61%), Gaps = 3/191 (1%)
Frame = +1
Query: 16 RMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKA 195
++E Y GP D + + +CDP+ LM++ +K P+ D F+ FGRV SG + GQ+
Sbjct: 316 QVEHNYTGPLDSDIVDAMNNCDPDGVLMVHTTKQYPSQDATAFHVFGRVMSGTLYAGQQV 375
Query: 196 RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 375
RI+G N+T +ED + R + RY + VP+GN + GVDQ +VKT TIT
Sbjct: 376 RILGENYTMEDEEDSRVGIVGRLWIAEARYNIEVNRVPAGNWVLIEGVDQPIVKTATITE 435
Query: 376 F---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEH 546
+ A+ + +KF+ +++AVEP NP++LPK+++GL+++ KS P++ EESGEH
Sbjct: 436 VQGSEEAYIFRPLKFNTCSTIKIAVEPHNPSELPKMLDGLRKVNKSYPLLTTKVEESGEH 495
Query: 547 IVAGAGELHLE 579
++ G GEL+L+
Sbjct: 496 VILGTGELYLD 506
>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 460 DLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 582
DL + + + R + DP + ++ES E I++G GELHL++
Sbjct: 36 DLDQFSKAINRFTREDPTFRVRFDDESKETIISGMGELHLDV 77
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 130 DKGRFYAFGRVFSGKVVTGQKARIMGPNFTP 222
+K F AF RV+SG + GQ+ I+GP P
Sbjct: 498 NKTHFMAFARVYSGTISRGQQLYILGPKHDP 528
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 31.5 bits (68), Expect = 0.52
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 458 AGFLGSTATRTTGDTLNFITFMLWAFLKVVMVP-VLTKN*STPTRPQMLPE 309
AG+ S+A+ TT +N++TF K V VP L+ + S+P P +L E
Sbjct: 621 AGYSTSSASSTTPKAVNYVTFKENHVSKEVSVPSPLSSDASSPASPSILGE 671
>SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6)
Length = 263
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 158 AFSLARLLPDKKLASWDQTLHLERKRTCMRRLSSV 262
A S++RL P + A W QT+H R R+ R+ SV
Sbjct: 182 AQSVSRLPPIYRRAEWAQTVHRARSRSIPARVESV 216
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = -1
Query: 524 IHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGD 417
I C MG D RLR ST L R F+GS T D
Sbjct: 1062 IECNMGFDAVMRLRTSTGL-RPVDFVGSFYMSNTTD 1096
>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 7 QKYRMEMLYEGPHDDEAAI 63
+++++ YEGPHDDEA +
Sbjct: 548 ERHKINFKYEGPHDDEAIV 566
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 506 SDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFITFMLWAFLKV 372
S+ RR +P T GR+ FLG+ + R T NF+ F+ F+++
Sbjct: 1690 SNDGRRFKPYTQFGRTKVFLGN-SDRNTVVGHNFLPFIKARFIRI 1733
>SB_2156| Best HMM Match : DUF1378 (HMM E-Value=6.3)
Length = 210
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3
Query: 426 DW*YTEFHHLHVVGILESGDGTSLD*ELIDSNETTDVTRGHILNSFNITS 277
DW T HH G ++ DG D E+ DSN+ VT L++ NI S
Sbjct: 152 DWALTNPHHDGPDG--KTSDGNKTDSEIQDSNKKESVTDKISLDACNIMS 199
>SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1)
Length = 311
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -3
Query: 417 YTEFHHLHVVGILESGDGTSLD*ELIDSNETTDVTRGHILNSFNITSHHKDCTLDSLL 244
+ E HHLH S + + L+ N T + R H+ S T+ C L ++L
Sbjct: 93 FWESHHLHFTAPSNSSEDSYYHGNLMLRNHTNRILRDHVFTSAACTTKLVVCYLIAIL 150
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 196 RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAI-EDVPSGNICGLVGV 339
+++ P T GK + RT +M EAI EDVPSG + GL +
Sbjct: 2133 KVIQPETTSGKSTIATSQDYHRTTVMDLFREEAIKEDVPSGLLQGLTQI 2181
>SB_22221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 148 AFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRY 285
A R FSG V K ++G KE+L K I +++ ++G Y
Sbjct: 210 AMFRAFSGLRVNDDKTEVLGLGPIKITKEELGVKKISKSVKILGVY 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,307,934
Number of Sequences: 59808
Number of extensions: 446066
Number of successful extensions: 1262
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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