Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0850
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.96 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 369 HHFQECPQHEGDEIQCITSRACRC 440
           HH    P+  G +++ I   AC C
Sbjct: 464 HHHPHPPETPGPQVETILQNACFC 487


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 87  SPTDDVREQDGADLRQGSFLRLWT 158
           SP +D   +  +D R+GS  R W+
Sbjct: 194 SPPNDEGIETDSDRRKGSIARCWS 217



 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 189 KSSHHGTKLYTWKERGLV*EDYPAYNPYDGTL 284
           +S H+  +L  W+   +V  DY  Y+  D  L
Sbjct: 272 ESDHNDGRLRYWRTPSVVVSDYSDYSYLDEKL 303


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 488 NVWLNLTPWCSV 523
           N WL  T WC V
Sbjct: 110 NRWLFTTDWCDV 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,077
Number of Sequences: 438
Number of extensions: 3728
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)