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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0850
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p...   283   8e-77
At5g25230.1 68418.m02991 elongation factor Tu family protein tra...   149   1e-36
At1g06220.2 68414.m00656 elongation factor Tu family protein sim...   148   3e-36
At1g06220.1 68414.m00655 elongation factor Tu family protein sim...   148   3e-36
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...   113   1e-25
At1g62750.1 68414.m07082 elongation factor Tu family protein sim...    72   2e-13
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati...    52   4e-07
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati...    52   4e-07
At2g41620.1 68415.m05143 nucleoporin interacting component famil...    31   0.75 
At2g47500.1 68415.m05929 kinesin motor protein-related                 30   0.99 
At1g04650.1 68414.m00462 hypothetical protein                          29   2.3  
At5g59740.1 68418.m07488 UDP-galactose/UDP-glucose transporter-r...    29   3.0  
At3g46180.1 68416.m04997 UDP-galactose/UDP-glucose transporter-r...    28   4.0  
At1g24050.1 68414.m03036 expressed protein                             28   4.0  
At5g05700.1 68418.m00627 arginine-tRNA-protein transferase 1 / a...    27   7.0  
At3g47480.1 68416.m05163 calcium-binding EF hand family protein ...    27   7.0  
At4g25170.1 68417.m03624 expressed protein                             27   9.2  
At3g06850.2 68416.m00813 branched chain alpha-keto acid dehydrog...    27   9.2  
At3g06850.1 68416.m00812 branched chain alpha-keto acid dehydrog...    27   9.2  
At2g16290.1 68415.m01865 F-box family protein contains Pfam PF00...    27   9.2  
At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family pr...    27   9.2  

>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
           putative similar to ELONGATION FACTOR 2 GB:O14460 from
           [Schizosaccharomyces pombe]
          Length = 843

 Score =  283 bits (693), Expect = 8e-77
 Identities = 132/195 (67%), Positives = 159/195 (81%), Gaps = 2/195 (1%)
 Frame = +1

Query: 4   AQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVT 183
           AQ+YR+E LYEGP DD+ A  I++CDP  PLM+YVSKM+P SDKGRF+AFGRVF+GKV T
Sbjct: 346 AQRYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFAGKVST 405

Query: 184 GQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTG 363
           G K RIMGPN+ PG+K+DLY K++QRT++ MG+  E +EDVP GN   +VG+DQF+ K  
Sbjct: 406 GMKVRIMGPNYIPGEKKDLYTKSVQRTVIWMGKRQETVEDVPCGNTVAMVGLDQFITKNA 465

Query: 364 TITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEES 537
           T+T  K  +AH ++ MKFSVSPVVRVAV+ K  +DLPKLVEGLKRLAKSDPMV C  EES
Sbjct: 466 TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEES 525

Query: 538 GEHIVAGAGELHLEI 582
           GEHIVAGAGELHLEI
Sbjct: 526 GEHIVAGAGELHLEI 540


>At5g25230.1 68418.m02991 elongation factor Tu family protein
            translation Elongation Factor 2, Schizosaccharomyces
            pombe, PIR:T39902
          Length = 973

 Score =  149 bits (362), Expect = 1e-36
 Identities = 71/191 (37%), Positives = 114/191 (59%), Gaps = 3/191 (1%)
 Frame = +1

Query: 16   RMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKA 195
            +++  Y G  D      +  CDP  PLM+ V+K+ P SD   F  FGRV+SG++ TGQ  
Sbjct: 448  KVDHSYTGTKDSPIYESMVECDPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGRLQTGQSV 507

Query: 196  RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 375
            R++G  ++P  +ED+  K + +  +   RY   +   P G+   + GVD  ++KT T+  
Sbjct: 508  RVLGEGYSPEDEEDMTIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCN 567

Query: 376  F---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEH 546
                ++ +  + +KF+  PVV+ A EP NP++LPK+VEGL++++KS P+     EESGEH
Sbjct: 568  ASYDEDVYIFRALKFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEH 627

Query: 547  IVAGAGELHLE 579
             + G GEL+L+
Sbjct: 628  TILGTGELYLD 638


>At1g06220.2 68414.m00656 elongation factor Tu family protein similar
            to Cryptosporidium parvum elongation factor-2 GB:U21667
            GI:706974 from [Cryptosporidium parvum]
          Length = 987

 Score =  148 bits (358), Expect = 3e-36
 Identities = 70/191 (36%), Positives = 114/191 (59%), Gaps = 3/191 (1%)
 Frame = +1

Query: 16   RMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKA 195
            +++  Y G  D      +  CDP  PLM+ V+K+ P SD   F  FGRV+SG++ TGQ  
Sbjct: 462  KVDHSYTGTKDSPIYESMVECDPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGRLQTGQSV 521

Query: 196  RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 375
            R++G  ++P  +ED+  K + +  +   RY   +   P G+   + GVD  ++KT T+  
Sbjct: 522  RVLGEGYSPEDEEDMTIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCN 581

Query: 376  F---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEH 546
                ++ +  + ++F+  PVV+ A EP NP++LPK+VEGL++++KS P+     EESGEH
Sbjct: 582  ASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEH 641

Query: 547  IVAGAGELHLE 579
             + G GEL+L+
Sbjct: 642  TILGTGELYLD 652


>At1g06220.1 68414.m00655 elongation factor Tu family protein similar
            to Cryptosporidium parvum elongation factor-2 GB:U21667
            GI:706974 from [Cryptosporidium parvum]
          Length = 987

 Score =  148 bits (358), Expect = 3e-36
 Identities = 70/191 (36%), Positives = 114/191 (59%), Gaps = 3/191 (1%)
 Frame = +1

Query: 16   RMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKA 195
            +++  Y G  D      +  CDP  PLM+ V+K+ P SD   F  FGRV+SG++ TGQ  
Sbjct: 462  KVDHSYTGTKDSPIYESMVECDPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGRLQTGQSV 521

Query: 196  RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 375
            R++G  ++P  +ED+  K + +  +   RY   +   P G+   + GVD  ++KT T+  
Sbjct: 522  RVLGEGYSPEDEEDMTIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCN 581

Query: 376  F---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEH 546
                ++ +  + ++F+  PVV+ A EP NP++LPK+VEGL++++KS P+     EESGEH
Sbjct: 582  ASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEH 641

Query: 547  IVAGAGELHLE 579
             + G GEL+L+
Sbjct: 642  TILGTGELYLD 652


>At3g22980.1 68416.m02898 elongation factor Tu family protein
           similar to eukaryotic translation elongation factor 2
           GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score =  113 bits (271), Expect = 1e-25
 Identities = 54/150 (36%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
 Frame = +1

Query: 142 FYAFGRVFSGKVVTGQKARIMGPNFTPGKKED----LYEKTIQRTILMMGRYVEAIEDVP 309
           F AF R+FSG +  GQ+  ++   + P K E     + E  +    LMMG+ +  + +V 
Sbjct: 440 FLAFARIFSGVLRAGQRVFVITALYDPLKGESSHKYIQEAELHSLYLMMGQGLTPVTEVK 499

Query: 310 SGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLK 489
           +GN+  + G+  ++ K+ T+++ +N   +  M+F VSP +RVA+EP +PAD+  L++GL+
Sbjct: 500 AGNVVAIRGLGPYISKSATLSSTRNCWPLASMEFQVSPTLRVAIEPSDPADMSALMKGLR 559

Query: 490 RLAKSDPMVQCINEESGEHIVAGAGELHLE 579
            L ++DP V+      GEH++A AGE+HLE
Sbjct: 560 LLNRADPFVEITVSARGEHVLAAAGEVHLE 589


>At1g62750.1 68414.m07082 elongation factor Tu family protein
           similar to elongation factor G SP:P34811 [Glycine max
           (Soybean)]
          Length = 783

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 2/183 (1%)
 Frame = +1

Query: 40  PHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFT 219
           P + E  I I+  D + P      K++     G    F RV+SGK+  G        N  
Sbjct: 379 PENPEITI-IRKPDDDEPFAGLAFKIMSDPFVGSL-TFVRVYSGKISAGSYVL----NAN 432

Query: 220 PGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTG-TITTFKNAHNM 396
            GKKE      I R + M     E ++   +G+I  L G+   +  TG T++  +N   +
Sbjct: 433 KGKKE-----RIGRLLEMHANSREDVKVALTGDIIALAGLKDTI--TGETLSDPENPVVL 485

Query: 397 KVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ-CINEESGEHIVAGAGELH 573
           + M F   PV++VA+EPK  AD+ K+  GL +LA+ DP      +EE  + ++ G GELH
Sbjct: 486 ERMDFP-DPVIKVAIEPKTKADIDKMATGLIKLAQEDPSFHFSRDEEMNQTVIEGMGELH 544

Query: 574 LEI 582
           LEI
Sbjct: 545 LEI 547


>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
           similar to SP|P25039 Elongation factor G 1,
           mitochondrial precursor (mEF-G-1) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00009: Elongation
           factor Tu GTP binding domain, PF03764: Elongation factor
           G domain IV, PF00679: Elongation factor G C-terminus
          Length = 754

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 3/170 (1%)
 Frame = +1

Query: 82  PEAPLMMYVSKMVPTSDKGRF--YAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTI 255
           P+ PL+    K+    ++GRF    + RV+ G +  G        N   GK+       +
Sbjct: 362 PDGPLVALAFKL----EEGRFGQLTYLRVYEGVIKKGDFII----NVNTGKRIK-----V 408

Query: 256 QRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRV 435
            R + M    +E I++  +G I  + G++       T T     + M  M     PV+ +
Sbjct: 409 PRLVRMHSNDMEDIQEAHAGQIVAVFGIE--CASGDTFTDGSVKYTMTSMNVP-EPVMSL 465

Query: 436 AVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 582
           AV+P +     +  + L R  K DP  +  ++ ESG+ I++G GELHL+I
Sbjct: 466 AVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDI 515


>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
           similar to mitochondrial elongation factor GI:3917 from
           [Saccharomyces cerevisiae]
          Length = 754

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 3/170 (1%)
 Frame = +1

Query: 82  PEAPLMMYVSKMVPTSDKGRF--YAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTI 255
           P+ PL+    K+    ++GRF    + RV+ G +  G        N   GK+       +
Sbjct: 362 PDGPLVALAFKL----EEGRFGQLTYLRVYEGVIKKGDFII----NVNTGKRIK-----V 408

Query: 256 QRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRV 435
            R + M    +E I++  +G I  + G++       T T     + M  M     PV+ +
Sbjct: 409 PRLVRMHSNDMEDIQEAHAGQIVAVFGIE--CASGDTFTDGSVKYTMTSMNVP-EPVMSL 465

Query: 436 AVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 582
           AV+P +     +  + L R  K DP  +  ++ ESG+ I++G GELHL+I
Sbjct: 466 AVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDI 515


>At2g41620.1 68415.m05143 nucleoporin interacting component family
           protein contains Pfam profile PF04097: Nucleoporin
           interacting component
          Length = 861

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -3

Query: 216 KVWSHDASFLSGNNLARENASKGVETTLVGGRHHLAHVHHQWGFRITALDTNGSFIIMGS 37
           K+W    +    ++  R+  SK +    +G RHHL H H +  F +  + T+ +   +G 
Sbjct: 251 KIWQLVQAITGEDSAVRQGVSKRMALA-IGARHHLQHGHEK--FIMDTIQTHPTQAALGG 307

Query: 36  LV*HLHTI 13
            V +L  I
Sbjct: 308 SVGNLQRI 315


>At2g47500.1 68415.m05929 kinesin motor protein-related 
          Length = 974

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 379 KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGL 486
           +N  N      S+S +VR  +  K P D+PKL+E L
Sbjct: 218 ENDSNKLSSPSSLSTLVRAVLSDKKPEDVPKLIESL 253


>At1g04650.1 68414.m00462 hypothetical protein
          Length = 936

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -3

Query: 390 VGILESGDGTSLD*ELIDSNETTDVTR-GHILNSFNITSHHKDCTLDSLLIQVLFLSRCK 214
           V + +   G S    + D  E T V   G +LN+  +T   +   LDSL +       CK
Sbjct: 313 VSLSQQTHGKSASEVMTDLLEKTTVDLLGALLNAAELTQEFRLTLLDSLFVDEFSNQICK 372

Query: 213 VWSHDA 196
             SHD+
Sbjct: 373 KQSHDS 378


>At5g59740.1 68418.m07488 UDP-galactose/UDP-glucose
           transporter-related weak similarity to
           UDP-galactose/UDP-glucose transporter [Arabidopsis
           thaliana] GI:22651763
          Length = 344

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 318 VTRGHILNSFNITSHHKDCTLDSLLIQVL 232
           + +GH+L + +  S H+DC LD  L+  +
Sbjct: 228 ILQGHLLPAVDFVSLHRDCLLDIALLSTV 256


>At3g46180.1 68416.m04997 UDP-galactose/UDP-glucose
           transporter-related contains weak similarity to
           UDP-galactose/UDP-glucose transporter (GI:22651763)
           [Arabidopsis thaliana]
          Length = 347

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 318 VTRGHILNSFNITSHHKDCTLDSLLIQVL 232
           + +GH+L + +  S H+DC  D  L+  +
Sbjct: 229 ILQGHLLPAVDFVSRHRDCLFDIALLSTV 257


>At1g24050.1 68414.m03036 expressed protein
          Length = 173

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 133 KGRFYAFGRVFSGKVVTGQKARIMGPNFTPG 225
           +G  +A G ++S KV+TG + R +G    PG
Sbjct: 15  EGEKFAVGNIYSVKVITGDEFRGIGTKPRPG 45


>At5g05700.1 68418.m00627 arginine-tRNA-protein transferase 1 /
           arginyltransferase 1 / arginyl-tRNA-protein transferase
           1 (ATE1) identical to SP|Q9ZT48 Arginine-tRNA-protein
           transferase 1 (EC 2.3.2.8) (R-transferase 1)
           (Arginyltransferase 1) (Arginyl-tRNA--protein
           transferase 1) {Arabidopsis thaliana}
          Length = 632

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
 Frame = +1

Query: 70  KSCDPEAPLMMYVSKMVPTSDKGRF-YAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYE 246
           K+C P   + +  S  VPT ++ R      R   GK+   Q     G + + G   D   
Sbjct: 78  KTCCPPYTIRLKASDFVPTKEQQRVSRRLERFLDGKLDV-QPREQRGAS-SSGDVSDTRR 135

Query: 247 KTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPV 426
           KT+        + VEA+ D  S NI   V   Q  +++G   +     NM++ K SV  V
Sbjct: 136 KTLGAAKSEENKKVEAVMDDLSKNIDQAV---QLCIRSGEFPS-----NMQIPKASVKKV 187


>At3g47480.1 68416.m05163 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 183

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 421 PVVRVAVEPKNPADLPKLVEGLKRLAK-SDPMVQCINEESGEHIV 552
           P+++  V P N AD+   VE +K +   S+ + +C+ EE  E+++
Sbjct: 63  PIIKKVVVP-NRADIKTSVEEVKAIIDDSEALYECLIEEGEEYLL 106


>At4g25170.1 68417.m03624 expressed protein
          Length = 344

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 143 KRPLSEVGTILLTYIISGASGSQLLIPMAASSSW 42
           K+  S  G+  LTY  S ASG  L +P+AA+S W
Sbjct: 59  KQRSSSSGSNNLTY--SAASGLLLNLPVAATSGW 90


>At3g06850.2 68416.m00813 branched chain alpha-keto acid
           dehydrogenase E2 subunit (din3) identical to branched
           chain alpha-keto acid dehydrogenase E2 subunit (din3)
           [Arabidopsis thaliana] GI:7021284
          Length = 483

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 430 RVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGE 567
           +VA+   +P D+ K+ E L RLA  D     +  +S E +  G  +
Sbjct: 128 KVALISHSPGDIIKVGETLVRLAVEDSQDSLLTTDSSEIVTLGGSK 173


>At3g06850.1 68416.m00812 branched chain alpha-keto acid
           dehydrogenase E2 subunit (din3) identical to branched
           chain alpha-keto acid dehydrogenase E2 subunit (din3)
           [Arabidopsis thaliana] GI:7021284
          Length = 483

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 430 RVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGE 567
           +VA+   +P D+ K+ E L RLA  D     +  +S E +  G  +
Sbjct: 128 KVALISHSPGDIIKVGETLVRLAVEDSQDSLLTTDSSEIVTLGGSK 173


>At2g16290.1 68415.m01865 F-box family protein contains Pfam
           PF00646: F-box domain;
          Length = 415

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 333 NETTDVTRGHILNSFNITSHHKDCTLDSLLIQVLFLSRC-KVWSHDASFLSG 181
           N+  ++  GH+  SF I      C     ++  L  SRC  + +HD SF +G
Sbjct: 9   NDLLELIVGHLETSFEIVLFRSVCRSWRSVVPPLDHSRCLGIKTHDISFNAG 60


>At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 258

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 194 LASWDQTLHLERKRTCMRRLSSVQSL 271
           L SWDQ+ HL+   +  R+L  V++L
Sbjct: 81  LDSWDQSHHLQETSSLKRKLLDVENL 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,179,623
Number of Sequences: 28952
Number of extensions: 310386
Number of successful extensions: 929
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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